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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.6 nTPM
HPA:19.6 nTPM
GTEx:43.7 nTPM
FANTOM5:94.6 Scaled Tags Per Million
Pig:38.7 nTPM
Mouse:59.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.3
1870 Female, age 42, unknown 20.6
1833 Male, age 53, unknown 18.8
1830 Male, age 51, unknown 18.5
1827 Male, age 72, unknown 17.9
2411 Female, age 72, unknown 17.9
2666 Male, age 74, left hemisphere 17.5
2828 Female, age 72, unknown 16.3
2219 Male, age 76, both hemispheres 16.0
2019 Male, age 18, unknown 15.9
2586 Male, age 75, left hemisphere 13.0
Dorsal raphe nucleus
nTPM: 16.8
2750 Male, age 76, both hemispheres 19.5
2016 Female, age 72, unknown 17.0
1828 Male, age 53, unknown 16.4
2047 Male, age 72, unknown 16.2
2298 Female, age 72, unknown 14.9
Inferior colliculus
nTPM: 18.4
2849 Male, age 72, unknown 19.1
1848 Female, age 42, unknown 18.6
1890 Male, age 53, unknown 18.2
2097 Female, age 72, unknown 17.7
Median raphe nucleus
nTPM: 17.0
2220 Male, age 76, midline 17.0
Pedunculopontine tegmental nucleus
nTPM: 18.1
1921 Female, age 85, both hemispheres 18.5
2334 Male, age 80, both hemispheres 18.5
2338 Male, age 61, both hemispheres 17.4
Periaquaductal grey, anterior
nTPM: 16.9
1947 Male, age 18, unknown 17.4
2502 Female, age 75, unknown 17.3
1795 Male, age 51, unknown 16.0
Periaquaductal grey, dorsal
nTPM: 17.9
2850 Male, age 76, both hemispheres 19.8
1831 Male, age 72, unknown 17.5
2464 Female, age 72, unknown 17.4
1840 Male, age 53, unknown 16.7
Periaquaductal grey, lateral
nTPM: 17.6
2140 Male, age 76, both hemispheres 18.5
2053 Male, age 18, unknown 18.2
2272 Male, age 74, both hemispheres 16.0
Pretectal area
nTPM: 17.3
2407 Male, age 75, both hemispheres 18.2
2316 Male, age 76, right hemisphere 18.1
2825 Male, age 18, unknown 18.0
1815 Male, age 53, unknown 17.7
1817 Female, age 42, unknown 17.4
2273 Male, age 74, both hemispheres 17.3
2224 Female, age 72, unknown 17.2
2667 Female, age 75, unknown 17.2
1816 Male, age 51, unknown 16.7
1944 Female, age 72, unknown 16.2
2007 Male, age 72, unknown 16.0
Red nucleus
nTPM: 19.6
2503 Female, age 72, unknown 21.4
1904 Male, age 53, unknown 21.2
2823 Male, age 76, right hemisphere 20.9
2725 Female, age 75, unknown 20.8
1821 Female, age 72, unknown 20.4
1865 Male, age 51, unknown 20.4
1954 Female, age 42, unknown 20.0
2227 Male, age 72, unknown 19.9
2769 Male, age 72, unknown 19.5
2785 Male, age 18, unknown 18.5
2588 Male, age 74, left hemisphere 18.3
2584 Male, age 75, left hemisphere 14.5
Substantia nigra
nTPM: 17.0
2409 Female, age 72, unknown 21.2
2665 Male, age 74, both hemispheres 18.5
1889 Female, age 72, unknown 17.6
2699 Male, age 18, unknown 17.5
2583 Male, age 75, right hemisphere 17.0
1851 Male, age 51, unknown 16.7
2590 Female, age 75, unknown 16.4
1941 Male, age 53, unknown 15.2
2241 Male, age 72, unknown 15.2
1916 Female, age 42, unknown 14.9
Superior colliculus
nTPM: 17.9
1913 Female, age 42, unknown 20.8
1995 Male, age 72, unknown 20.4
1839 Male, age 51, unknown 18.7
1895 Male, age 76, right hemisphere 18.6
1796 Male, age 53, unknown 18.0
2261 Male, age 18, unknown 17.6
2587 Male, age 74, left hemisphere 17.4
2668 Female, age 75, unknown 17.0
2087 Female, age 72, unknown 16.1
2664 Male, age 75, both hemispheres 14.9
Ventral tegmental area
nTPM: 17.4
2223 Female, age 72, unknown 19.3
2410 Female, age 72, unknown 18.2
2021 Male, age 53, unknown 17.3
2218 Male, age 76, both hemispheres 17.3
1942 Male, age 51, unknown 16.2
1915 Female, age 42, unknown 16.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.7
Samples: 139

Max nTPM: 75.4
Min nTPM: 16.7
Std nTPM: 10.7
Median nTPM: 42.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 73.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 72.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 66.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 64.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 63.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 60.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 60.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 60.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 59.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.6
FF:10158-103A5 76 years, female 94.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.7
Pig sample Sample description nTPM
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 51.0
Min nTPM: 33.0
Sample A Female 51.0
Sample B Female 36.2
Sample C Male 34.6
Sample D Male 33.0
Periaqueductal gray
nTPM: 35.4
Samples: 3

Max nTPM: 36.4
Min nTPM: 33.5
Sample B Female 36.4
Sample C Male 36.3
Sample D Male 33.5
Substantia nigra
nTPM: 34.1
Samples: 4

Max nTPM: 36.1
Min nTPM: 32.2
Sample A Female 35.1
Sample B Female 32.2
Sample C Male 32.9
Sample D Male 36.1
Superior colliculi
nTPM: 35.0
Samples: 4

Max nTPM: 36.6
Min nTPM: 32.9
Sample A Female 36.6
Sample B Female 32.9
Sample C Male 35.0
Sample D Male 35.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.7
Samples: 4

Max nTPM: 62.6
Min nTPM: 57.6
Sample A Male 62.6
Sample B Male 60.5
Sample C Female 57.6
Sample D Female 57.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71723961 Antisense, RP_050921_01_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.