ABOUTMENU
HELP
NEWS
PSMB2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:30.6 nTPM
FANTOM5:155.7 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:156.3 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.7
2411 Female, age 72, unknown 10.0
2219 Male, age 76, both hemispheres 9.8
1870 Female, age 42, unknown 9.2
1833 Male, age 53, unknown 9.1
1827 Male, age 72, unknown 8.7
1830 Male, age 51, unknown 8.6
2019 Male, age 18, unknown 8.4
2666 Male, age 74, left hemisphere 8.3
2828 Female, age 72, unknown 8.1
2586 Male, age 75, left hemisphere 6.5
Dorsal raphe nucleus
nTPM: 9.0
2750 Male, age 76, both hemispheres 9.9
2047 Male, age 72, unknown 9.4
2298 Female, age 72, unknown 9.4
1828 Male, age 53, unknown 8.4
2016 Female, age 72, unknown 7.9
Inferior colliculus
nTPM: 8.1
2097 Female, age 72, unknown 8.8
1890 Male, age 53, unknown 8.2
1848 Female, age 42, unknown 8.1
2849 Male, age 72, unknown 7.4
Median raphe nucleus
nTPM: 9.7
2220 Male, age 76, midline 9.7
Pedunculopontine tegmental nucleus
nTPM: 9.7
2334 Male, age 80, both hemispheres 10.0
2338 Male, age 61, both hemispheres 9.7
1921 Female, age 85, both hemispheres 9.3
Periaquaductal grey, anterior
nTPM: 8.5
1947 Male, age 18, unknown 9.2
2502 Female, age 75, unknown 8.3
1795 Male, age 51, unknown 8.1
Periaquaductal grey, dorsal
nTPM: 8.0
2850 Male, age 76, both hemispheres 8.5
2464 Female, age 72, unknown 8.2
1831 Male, age 72, unknown 7.8
1840 Male, age 53, unknown 7.5
Periaquaductal grey, lateral
nTPM: 8.3
2272 Male, age 74, both hemispheres 9.1
2053 Male, age 18, unknown 8.2
2140 Male, age 76, both hemispheres 7.7
Pretectal area
nTPM: 9.0
2667 Female, age 75, unknown 9.9
1815 Male, age 53, unknown 9.4
1816 Male, age 51, unknown 9.3
2007 Male, age 72, unknown 9.3
2224 Female, age 72, unknown 9.2
1817 Female, age 42, unknown 9.1
2273 Male, age 74, both hemispheres 9.0
1944 Female, age 72, unknown 8.9
2316 Male, age 76, right hemisphere 8.3
2407 Male, age 75, both hemispheres 8.2
2825 Male, age 18, unknown 8.1
Red nucleus
nTPM: 8.7
1821 Female, age 72, unknown 9.7
1904 Male, age 53, unknown 9.5
1865 Male, age 51, unknown 9.4
1954 Female, age 42, unknown 8.8
2785 Male, age 18, unknown 8.8
2823 Male, age 76, right hemisphere 8.8
2588 Male, age 74, left hemisphere 8.5
2769 Male, age 72, unknown 8.5
2227 Male, age 72, unknown 8.4
2503 Female, age 72, unknown 8.2
2725 Female, age 75, unknown 8.2
2584 Male, age 75, left hemisphere 7.8
Substantia nigra
nTPM: 9.2
1851 Male, age 51, unknown 10.5
1916 Female, age 42, unknown 10.4
2241 Male, age 72, unknown 9.9
1889 Female, age 72, unknown 9.4
1941 Male, age 53, unknown 9.2
2699 Male, age 18, unknown 9.1
2590 Female, age 75, unknown 8.8
2583 Male, age 75, right hemisphere 8.2
2409 Female, age 72, unknown 8.1
2665 Male, age 74, both hemispheres 8.0
Superior colliculus
nTPM: 8.5
2587 Male, age 74, left hemisphere 9.1
1895 Male, age 76, right hemisphere 9.0
1913 Female, age 42, unknown 8.9
2261 Male, age 18, unknown 8.8
2668 Female, age 75, unknown 8.7
2087 Female, age 72, unknown 8.6
1995 Male, age 72, unknown 8.5
1796 Male, age 53, unknown 8.4
1839 Male, age 51, unknown 8.0
2664 Male, age 75, both hemispheres 6.9
Ventral tegmental area
nTPM: 9.6
2218 Male, age 76, both hemispheres 10.9
2410 Female, age 72, unknown 10.7
2223 Female, age 72, unknown 9.6
1915 Female, age 42, unknown 9.5
2021 Male, age 53, unknown 8.9
1942 Male, age 51, unknown 8.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.6
Samples: 139

Max nTPM: 53.3
Min nTPM: 17.6
Std nTPM: 6.2
Median nTPM: 30.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 46.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 41.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 41.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 40.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 40.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 39.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 39.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 155.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 155.7
FF:10158-103A5 76 years, female 155.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.8
Pig sample Sample description nTPM
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 22.7
Min nTPM: 16.0
Sample A Female 22.7
Sample B Female 16.4
Sample C Male 17.7
Sample D Male 16.0
Periaqueductal gray
nTPM: 15.4
Samples: 3

Max nTPM: 16.5
Min nTPM: 14.3
Sample B Female 15.4
Sample C Male 16.5
Sample D Male 14.3
Substantia nigra
nTPM: 18.1
Samples: 4

Max nTPM: 22.3
Min nTPM: 15.4
Sample A Female 22.3
Sample B Female 16.5
Sample C Male 18.0
Sample D Male 15.4
Superior colliculi
nTPM: 18.8
Samples: 4

Max nTPM: 21.1
Min nTPM: 16.8
Sample A Female 21.1
Sample B Female 19.2
Sample C Male 18.1
Sample D Male 16.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 156.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 156.3
Samples: 4

Max nTPM: 165.1
Min nTPM: 151.3
Sample A Male 165.1
Sample B Male 153.6
Sample C Female 151.3
Sample D Female 155.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
74988552 Antisense, RP_060315_05_E12, Mouse strain C57BL/6J (56 days, male) 1.3
70473951 Antisense, RP_050614_04_F03, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.