ABOUTMENU
HELP
NEWS
UROD
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.4 nTPM
HPA:73.4 nTPM
GTEx:55.5 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:53.3 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.7
2586 Male, age 75, left hemisphere 74.7
1827 Male, age 72, unknown 73.5
2019 Male, age 18, unknown 71.9
2666 Male, age 74, left hemisphere 71.5
2828 Female, age 72, unknown 71.4
1870 Female, age 42, unknown 70.3
2411 Female, age 72, unknown 70.1
2219 Male, age 76, both hemispheres 68.5
1833 Male, age 53, unknown 67.9
1830 Male, age 51, unknown 67.5
Dorsal raphe nucleus
nTPM: 70.5
2298 Female, age 72, unknown 73.1
2047 Male, age 72, unknown 71.0
2750 Male, age 76, both hemispheres 70.7
1828 Male, age 53, unknown 70.3
2016 Female, age 72, unknown 67.7
Inferior colliculus
nTPM: 69.8
2097 Female, age 72, unknown 71.8
1890 Male, age 53, unknown 70.9
1848 Female, age 42, unknown 68.3
2849 Male, age 72, unknown 68.3
Median raphe nucleus
nTPM: 70.0
2220 Male, age 76, midline 70.0
Pedunculopontine tegmental nucleus
nTPM: 70.6
2334 Male, age 80, both hemispheres 71.3
2338 Male, age 61, both hemispheres 71.0
1921 Female, age 85, both hemispheres 69.4
Periaquaductal grey, anterior
nTPM: 70.1
1795 Male, age 51, unknown 71.1
1947 Male, age 18, unknown 69.7
2502 Female, age 75, unknown 69.4
Periaquaductal grey, dorsal
nTPM: 68.5
1831 Male, age 72, unknown 70.1
1840 Male, age 53, unknown 69.3
2464 Female, age 72, unknown 67.6
2850 Male, age 76, both hemispheres 67.0
Periaquaductal grey, lateral
nTPM: 68.0
2272 Male, age 74, both hemispheres 69.5
2053 Male, age 18, unknown 68.5
2140 Male, age 76, both hemispheres 66.1
Pretectal area
nTPM: 72.3
1816 Male, age 51, unknown 77.7
1817 Female, age 42, unknown 75.4
2007 Male, age 72, unknown 75.2
1944 Female, age 72, unknown 74.8
1815 Male, age 53, unknown 73.7
2273 Male, age 74, both hemispheres 71.9
2667 Female, age 75, unknown 71.3
2224 Female, age 72, unknown 70.2
2407 Male, age 75, both hemispheres 69.8
2825 Male, age 18, unknown 69.4
2316 Male, age 76, right hemisphere 65.9
Red nucleus
nTPM: 70.4
1821 Female, age 72, unknown 73.8
2785 Male, age 18, unknown 71.5
2725 Female, age 75, unknown 71.4
1954 Female, age 42, unknown 70.9
1865 Male, age 51, unknown 70.5
2503 Female, age 72, unknown 70.5
1904 Male, age 53, unknown 70.4
2227 Male, age 72, unknown 70.0
2769 Male, age 72, unknown 69.7
2588 Male, age 74, left hemisphere 69.3
2584 Male, age 75, left hemisphere 68.3
2823 Male, age 76, right hemisphere 67.9
Substantia nigra
nTPM: 73.4
1916 Female, age 42, unknown 79.4
1851 Male, age 51, unknown 75.6
1889 Female, age 72, unknown 75.3
2665 Male, age 74, both hemispheres 74.5
1941 Male, age 53, unknown 73.3
2590 Female, age 75, unknown 72.5
2699 Male, age 18, unknown 72.0
2583 Male, age 75, right hemisphere 70.9
2409 Female, age 72, unknown 70.6
2241 Male, age 72, unknown 69.7
Superior colliculus
nTPM: 70.5
2087 Female, age 72, unknown 72.5
1796 Male, age 53, unknown 72.4
2664 Male, age 75, both hemispheres 71.9
2261 Male, age 18, unknown 71.5
2668 Female, age 75, unknown 71.3
2587 Male, age 74, left hemisphere 70.6
1913 Female, age 42, unknown 69.6
1895 Male, age 76, right hemisphere 68.8
1995 Male, age 72, unknown 68.8
1839 Male, age 51, unknown 67.8
Ventral tegmental area
nTPM: 71.8
2410 Female, age 72, unknown 76.0
1915 Female, age 42, unknown 74.3
2218 Male, age 76, both hemispheres 71.6
1942 Male, age 51, unknown 70.1
2223 Female, age 72, unknown 69.8
2021 Male, age 53, unknown 69.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.5
Samples: 139

Max nTPM: 128.2
Min nTPM: 30.1
Std nTPM: 14.0
Median nTPM: 51.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 128.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 114.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 93.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 91.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 85.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 78.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 78.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 77.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 74.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.2
Pig sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 28.7
Min nTPM: 18.2
Sample A Female 28.7
Sample B Female 20.0
Sample C Male 21.8
Sample D Male 18.2
Periaqueductal gray
nTPM: 15.7
Samples: 3

Max nTPM: 17.3
Min nTPM: 14.4
Sample B Female 15.3
Sample C Male 17.3
Sample D Male 14.4
Substantia nigra
nTPM: 20.7
Samples: 4

Max nTPM: 26.2
Min nTPM: 16.4
Sample A Female 26.2
Sample B Female 19.9
Sample C Male 20.2
Sample D Male 16.4
Superior colliculi
nTPM: 21.5
Samples: 4

Max nTPM: 25.7
Min nTPM: 18.9
Sample A Female 25.7
Sample B Female 19.0
Sample C Male 22.4
Sample D Male 18.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 55.7
Min nTPM: 50.9
Sample A Male 55.7
Sample B Male 51.4
Sample C Female 50.9
Sample D Female 55.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
74581008 Antisense, RP_060215_02_D02, Mouse strain C57BL/6J (56 days, male) 3.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.