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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:34.5 nTPM
HPA:34.5 nTPM
GTEx:43.1 nTPM
FANTOM5:86.4 Scaled Tags Per Million
Pig:39.6 nTPM
Mouse:62.9 nTPM
Allen mouse:5.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041082Antibody HPA044227
Glial cells HighHigh
Neuronal cells HighHigh



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.5
Sample id Sample description nTPM
Hippocampus
nTPM: 29.5
1898 Male, age 80, left hemisphere 31.7
2621 Female, age 67, right hemisphere 31.1
2148 Female, age 91, left hemisphere 30.2
1855 Male, age 76, left hemisphere 30.0
1911 Female, age 85, right hemisphere 26.9
2529 Female, age 94, left hemisphere 26.7
Dentate gyrus
nTPM: 31.1
2531 Female, age 67, both hemispheres 33.5
2528 Male, age 74, both hemispheres 31.5
2246 Female, age 85, both hemispheres 31.4
1927 Female, age 91, both hemispheres 30.8
2010 Male, age 76, both hemispheres 29.6
2530 Female, age 94, left hemisphere 29.6
Entorhinal gyrus
nTPM: 30.6
2764 Male, age 80, right hemisphere 35.0
1787 Male, age 76, left hemisphere 32.3
2613 Female, age 94, left hemisphere 30.5
1938 Female, age 85, left hemisphere 30.4
2686 Male, age 75, right hemisphere 28.3
2117 Female, age 91, right hemisphere 27.3
Hippocampus, CA1
nTPM: 34.5
2749 Male, age 80, left hemisphere 50.6
2045 Male, age 76, both hemispheres 33.5
1873 Female, age 85, both hemispheres 30.2
2082 Female, age 91, right hemisphere 29.4
2527 Male, age 74, both hemispheres 28.6
Hippocampus, CA2
nTPM: 30.2
1892 Male, age 76, both hemispheres 34.2
2249 Male, age 74, both hemispheres 31.0
1963 Male, age 80, left hemisphere 30.3
1940 Female, age 85, left hemisphere 29.3
2113 Female, age 91, right hemisphere 28.6
2437 Female, age 94, left hemisphere 27.9
Hippocampus, CA3
nTPM: 33.2
2620 Female, age 94, left hemisphere 42.3
2137 Male, age 80, left hemisphere 39.7
1867 Male, age 76, both hemispheres 30.2
2436 Male, age 74, both hemispheres 30.2
1891 Female, age 85, both hemispheres 29.3
2861 Female, age 67, both hemispheres 27.6
Parahippocampal cortex
nTPM: 30.3
1850 Male, age 80, both hemispheres 32.9
2693 Female, age 94, both hemispheres 31.0
2250 Female, age 67, right hemisphere 30.6
2245 Female, age 91, both hemispheres 30.4
1990 Female, age 91, right hemisphere 30.2
2018 Male, age 76, both hemispheres 30.1
1933 Female, age 85, both hemispheres 29.6
2532 Female, age 72, left hemisphere 29.6
2622 Female, age 67, right hemisphere 29.5
2692 Male, age 74, both hemispheres 28.7
Perirhinal gyrus
nTPM: 34.2
1847 Female, age 91, left hemisphere 39.0
1794 Male, age 80, right hemisphere 36.5
2521 Female, age 94, right hemisphere 32.7
1841 Female, age 85, right hemisphere 31.6
2848 Male, age 76, right hemisphere 31.3
Subiculum
nTPM: 28.3
1901 Male, age 80, both hemispheres 31.8
1977 Female, age 85, both hemispheres 31.5
2619 Male, age 74, both hemispheres 30.9
2729 Female, age 91, right hemisphere 26.8
2042 Male, age 76, both hemispheres 25.6
2438 Female, age 94, left hemisphere 23.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.1
Samples: 197

Max nTPM: 73.1
Min nTPM: 17.1
Std nTPM: 11.2
Median nTPM: 42.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 73.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 72.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 70.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 68.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 66.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 66.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 64.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 62.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 62.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 62.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 62.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 86.4
FF:10169-103B7 60 years, female 117.1
FF:10153-102I9 76 years, female 55.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 39.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.2
Samples: 4

Max nTPM: 47.7
Min nTPM: 28.5
Sample A Female 47.7
Sample B Female 38.7
Sample C Male 37.8
Sample D Male 28.5
Entorhinal cortex
nTPM: 37.4
Samples: 4

Max nTPM: 39.6
Min nTPM: 32.2
Sample A Female 39.1
Sample B Female 39.6
Sample C Male 38.5
Sample D Male 32.2
Subiculum
nTPM: 37.6
Samples: 4

Max nTPM: 47.4
Min nTPM: 30.7
Sample A Female 47.4
Sample B Female 34.5
Sample C Male 37.6
Sample D Male 30.7
Ventral hippocampus
nTPM: 39.6
Samples: 4

Max nTPM: 51.0
Min nTPM: 27.8
Sample A Female 39.1
Sample B Female 27.8
Sample C Male 51.0
Sample D Male 40.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 62.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.9
Samples: 4

Max nTPM: 66.0
Min nTPM: 60.7
Sample A Male 60.7
Sample B Male 62.3
Sample C Female 66.0
Sample D Female 62.7
Hippocampal formation
nTPM: 62.9
Samples: 4

Max nTPM: 66.6
Min nTPM: 58.2
Sample A Male 66.6
Sample B Male 58.2
Sample C Female 61.3
Sample D Female 65.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.8
76098384 Antisense, RP_060626_01_F09, Mouse strain C57BL/6J (56 days, male) 9.2
79556700 Antisense, RP_071204_01_D04, Mouse strain C57BL/6J (56 days, male) 4.8
1966 Antisense, RP_040507_02_C01, Mouse strain C57BL/6J (56 days, male) 3.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.