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TRAP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.2 nTPM
HPA:32.2 nTPM
GTEx:41.9 nTPM
FANTOM5:55.4 Scaled Tags Per Million
Pig:45.3 nTPM
Mouse:72.2 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2411 Female, age 72, unknown 32.0
1827 Male, age 72, unknown 29.5
2019 Male, age 18, unknown 29.5
2586 Male, age 75, left hemisphere 29.2
2219 Male, age 76, both hemispheres 28.6
1833 Male, age 53, unknown 27.4
2666 Male, age 74, left hemisphere 27.3
2828 Female, age 72, unknown 26.0
1830 Male, age 51, unknown 25.5
1870 Female, age 42, unknown 25.5
Dorsal raphe nucleus
nTPM: 28.7
2298 Female, age 72, unknown 31.1
2047 Male, age 72, unknown 31.0
1828 Male, age 53, unknown 28.6
2750 Male, age 76, both hemispheres 28.0
2016 Female, age 72, unknown 24.8
Inferior colliculus
nTPM: 29.1
2097 Female, age 72, unknown 29.7
1890 Male, age 53, unknown 29.3
1848 Female, age 42, unknown 29.1
2849 Male, age 72, unknown 28.1
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Pedunculopontine tegmental nucleus
nTPM: 27.1
1921 Female, age 85, both hemispheres 32.7
2334 Male, age 80, both hemispheres 27.2
2338 Male, age 61, both hemispheres 21.2
Periaquaductal grey, anterior
nTPM: 29.2
1947 Male, age 18, unknown 31.5
1795 Male, age 51, unknown 29.6
2502 Female, age 75, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 26.7
1840 Male, age 53, unknown 29.8
2464 Female, age 72, unknown 27.6
1831 Male, age 72, unknown 25.5
2850 Male, age 76, both hemispheres 24.0
Periaquaductal grey, lateral
nTPM: 27.9
2272 Male, age 74, both hemispheres 30.9
2053 Male, age 18, unknown 27.5
2140 Male, age 76, both hemispheres 25.2
Pretectal area
nTPM: 32.2
1944 Female, age 72, unknown 39.8
2007 Male, age 72, unknown 39.5
1816 Male, age 51, unknown 38.7
1817 Female, age 42, unknown 35.9
2667 Female, age 75, unknown 34.2
1815 Male, age 53, unknown 31.9
2224 Female, age 72, unknown 31.5
2273 Male, age 74, both hemispheres 28.3
2825 Male, age 18, unknown 27.1
2316 Male, age 76, right hemisphere 25.1
2407 Male, age 75, both hemispheres 22.3
Red nucleus
nTPM: 26.4
2725 Female, age 75, unknown 29.7
2588 Male, age 74, left hemisphere 29.2
2785 Male, age 18, unknown 27.8
2584 Male, age 75, left hemisphere 27.1
2503 Female, age 72, unknown 27.0
1954 Female, age 42, unknown 26.4
1821 Female, age 72, unknown 25.9
2227 Male, age 72, unknown 25.6
1904 Male, age 53, unknown 25.0
2769 Male, age 72, unknown 24.5
2823 Male, age 76, right hemisphere 24.3
1865 Male, age 51, unknown 24.0
Substantia nigra
nTPM: 30.2
1889 Female, age 72, unknown 35.5
1916 Female, age 42, unknown 34.8
1851 Male, age 51, unknown 33.3
1941 Male, age 53, unknown 30.8
2665 Male, age 74, both hemispheres 29.8
2590 Female, age 75, unknown 29.5
2409 Female, age 72, unknown 28.6
2241 Male, age 72, unknown 28.4
2699 Male, age 18, unknown 26.3
2583 Male, age 75, right hemisphere 24.8
Superior colliculus
nTPM: 28.7
2087 Female, age 72, unknown 33.6
2261 Male, age 18, unknown 31.9
1796 Male, age 53, unknown 30.9
2664 Male, age 75, both hemispheres 29.8
2587 Male, age 74, left hemisphere 29.0
1895 Male, age 76, right hemisphere 27.7
1839 Male, age 51, unknown 26.6
1913 Female, age 42, unknown 26.2
2668 Female, age 75, unknown 26.2
1995 Male, age 72, unknown 25.3
Ventral tegmental area
nTPM: 28.8
2410 Female, age 72, unknown 33.2
2218 Male, age 76, both hemispheres 30.8
1915 Female, age 42, unknown 30.7
1942 Male, age 51, unknown 26.9
2223 Female, age 72, unknown 26.8
2021 Male, age 53, unknown 24.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.9
Samples: 139

Max nTPM: 78.2
Min nTPM: 24.6
Std nTPM: 9.7
Median nTPM: 40.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 78.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 69.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 63.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 63.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 60.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 59.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 59.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 58.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 57.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 56.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 56.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.4
FF:10158-103A5 76 years, female 55.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.3
Pig sample Sample description nTPM
Midbrain
nTPM: 43.5
Samples: 4

Max nTPM: 56.2
Min nTPM: 33.7
Sample A Female 42.0
Sample B Female 33.7
Sample C Male 56.2
Sample D Male 42.0
Periaqueductal gray
nTPM: 30.9
Samples: 3

Max nTPM: 36.9
Min nTPM: 25.9
Sample B Female 29.8
Sample C Male 36.9
Sample D Male 25.9
Substantia nigra
nTPM: 40.2
Samples: 4

Max nTPM: 54.2
Min nTPM: 28.5
Sample A Female 54.2
Sample B Female 29.7
Sample C Male 48.2
Sample D Male 28.5
Superior colliculi
nTPM: 45.3
Samples: 4

Max nTPM: 52.2
Min nTPM: 37.0
Sample A Female 50.0
Sample B Female 37.0
Sample C Male 52.2
Sample D Male 42.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.3
Samples: 4

Max nTPM: 74.5
Min nTPM: 70.0
Sample A Male 73.7
Sample B Male 70.8
Sample C Female 70.0
Sample D Female 74.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
76098384 Antisense, RP_060626_01_F09, Mouse strain C57BL/6J (56 days, male) 7.7
79556700 Antisense, RP_071204_01_D04, Mouse strain C57BL/6J (56 days, male) 4.5
1966 Antisense, RP_040507_02_C01, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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