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PNKD
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.9 nTPM
HPA:130.9 nTPM
GTEx:112.1 nTPM
FANTOM5:60.7 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:190.0 nTPM
Allen mouse:9.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 130.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.3
2019 Male, age 18, unknown 138.1
2586 Male, age 75, left hemisphere 133.4
1833 Male, age 53, unknown 125.9
1827 Male, age 72, unknown 125.0
2828 Female, age 72, unknown 123.1
1870 Female, age 42, unknown 122.9
1830 Male, age 51, unknown 122.8
2411 Female, age 72, unknown 122.8
2219 Male, age 76, both hemispheres 120.5
2666 Male, age 74, left hemisphere 118.4
Dorsal raphe nucleus
nTPM: 124.2
1828 Male, age 53, unknown 127.3
2298 Female, age 72, unknown 125.8
2047 Male, age 72, unknown 124.3
2750 Male, age 76, both hemispheres 122.9
2016 Female, age 72, unknown 120.4
Inferior colliculus
nTPM: 130.9
1848 Female, age 42, unknown 131.8
1890 Male, age 53, unknown 131.2
2097 Female, age 72, unknown 130.6
2849 Male, age 72, unknown 129.9
Median raphe nucleus
nTPM: 122.3
2220 Male, age 76, midline 122.3
Pedunculopontine tegmental nucleus
nTPM: 122.3
1921 Female, age 85, both hemispheres 123.2
2338 Male, age 61, both hemispheres 122.0
2334 Male, age 80, both hemispheres 121.7
Periaquaductal grey, anterior
nTPM: 118.6
2502 Female, age 75, unknown 122.8
1795 Male, age 51, unknown 116.9
1947 Male, age 18, unknown 116.0
Periaquaductal grey, dorsal
nTPM: 119.2
2464 Female, age 72, unknown 121.4
2850 Male, age 76, both hemispheres 119.8
1840 Male, age 53, unknown 119.1
1831 Male, age 72, unknown 116.7
Periaquaductal grey, lateral
nTPM: 117.0
2272 Male, age 74, both hemispheres 117.6
2140 Male, age 76, both hemispheres 117.1
2053 Male, age 18, unknown 116.4
Pretectal area
nTPM: 126.7
2007 Male, age 72, unknown 138.0
1817 Female, age 42, unknown 136.5
1944 Female, age 72, unknown 134.0
2667 Female, age 75, unknown 130.5
2407 Male, age 75, both hemispheres 130.2
1816 Male, age 51, unknown 129.6
1815 Male, age 53, unknown 126.2
2316 Male, age 76, right hemisphere 117.6
2825 Male, age 18, unknown 117.6
2273 Male, age 74, both hemispheres 117.5
2224 Female, age 72, unknown 116.2
Red nucleus
nTPM: 124.8
2785 Male, age 18, unknown 134.4
1821 Female, age 72, unknown 130.2
2769 Male, age 72, unknown 126.5
2227 Male, age 72, unknown 125.3
2584 Male, age 75, left hemisphere 124.7
2588 Male, age 74, left hemisphere 123.4
1954 Female, age 42, unknown 123.1
2823 Male, age 76, right hemisphere 122.8
1865 Male, age 51, unknown 122.6
1904 Male, age 53, unknown 122.3
2725 Female, age 75, unknown 121.5
2503 Female, age 72, unknown 120.7
Substantia nigra
nTPM: 126.6
1889 Female, age 72, unknown 132.9
1941 Male, age 53, unknown 132.6
1916 Female, age 42, unknown 131.7
1851 Male, age 51, unknown 128.6
2665 Male, age 74, both hemispheres 128.5
2583 Male, age 75, right hemisphere 127.6
2699 Male, age 18, unknown 125.4
2241 Male, age 72, unknown 121.1
2409 Female, age 72, unknown 118.7
2590 Female, age 75, unknown 118.5
Superior colliculus
nTPM: 124.4
2087 Female, age 72, unknown 130.5
1895 Male, age 76, right hemisphere 129.0
2664 Male, age 75, both hemispheres 128.5
2668 Female, age 75, unknown 126.4
1839 Male, age 51, unknown 125.4
1796 Male, age 53, unknown 123.7
2587 Male, age 74, left hemisphere 120.9
1995 Male, age 72, unknown 120.5
1913 Female, age 42, unknown 120.4
2261 Male, age 18, unknown 118.8
Ventral tegmental area
nTPM: 121.3
1915 Female, age 42, unknown 127.4
2410 Female, age 72, unknown 126.4
2218 Male, age 76, both hemispheres 122.1
1942 Male, age 51, unknown 120.2
2223 Female, age 72, unknown 116.7
2021 Male, age 53, unknown 115.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 112.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.1
Samples: 139

Max nTPM: 268.2
Min nTPM: 56.2
Std nTPM: 28.5
Median nTPM: 105.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 268.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 202.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 195.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 173.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 170.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 169.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 168.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 167.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 164.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 155.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 153.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.7
FF:10158-103A5 76 years, female 60.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.9
Pig sample Sample description nTPM
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 19.3
Sample A Female 20.2
Sample B Female 19.3
Sample C Male 29.5
Sample D Male 28.9
Periaqueductal gray
nTPM: 20.3
Samples: 3

Max nTPM: 21.8
Min nTPM: 19.0
Sample B Female 20.2
Sample C Male 21.8
Sample D Male 19.0
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 23.0
Min nTPM: 15.6
Sample A Female 23.0
Sample B Female 15.6
Sample C Male 21.0
Sample D Male 17.6
Superior colliculi
nTPM: 31.9
Samples: 4

Max nTPM: 41.5
Min nTPM: 17.6
Sample A Female 34.5
Sample B Female 17.6
Sample C Male 41.5
Sample D Male 33.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 190.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 190.0
Samples: 4

Max nTPM: 195.8
Min nTPM: 184.0
Sample A Male 187.0
Sample B Male 184.0
Sample C Female 195.8
Sample D Female 193.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
69262253 Antisense, RP_050301_02_A01, Mouse strain C57BL/6J (56 days, male) 9.9
73769326 Antisense, RP_051121_04_B11, Mouse strain C57BL/6J (56 days, male) 9.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.