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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:129.9 nTPM
HPA:129.9 nTPM
GTEx:111.1 nTPM
FANTOM5:49.0 Scaled Tags Per Million
Pig:54.1 nTPM
Mouse:88.5 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.3
2019 Male, age 18, unknown 133.7
2411 Female, age 72, unknown 131.9
2586 Male, age 75, left hemisphere 127.7
2828 Female, age 72, unknown 125.5
1827 Male, age 72, unknown 122.7
1870 Female, age 42, unknown 122.7
1833 Male, age 53, unknown 120.9
1830 Male, age 51, unknown 120.4
2219 Male, age 76, both hemispheres 119.6
2666 Male, age 74, left hemisphere 118.3
Dorsal raphe nucleus
nTPM: 129.9
2298 Female, age 72, unknown 135.9
2047 Male, age 72, unknown 130.8
2750 Male, age 76, both hemispheres 130.4
1828 Male, age 53, unknown 128.6
2016 Female, age 72, unknown 123.8
Inferior colliculus
nTPM: 121.4
2097 Female, age 72, unknown 127.9
1890 Male, age 53, unknown 123.7
1848 Female, age 42, unknown 119.5
2849 Male, age 72, unknown 114.4
Median raphe nucleus
nTPM: 125.5
2220 Male, age 76, midline 125.5
Pedunculopontine tegmental nucleus
nTPM: 122.2
1921 Female, age 85, both hemispheres 125.3
2334 Male, age 80, both hemispheres 122.7
2338 Male, age 61, both hemispheres 118.5
Periaquaductal grey, anterior
nTPM: 121.8
1795 Male, age 51, unknown 124.4
2502 Female, age 75, unknown 121.5
1947 Male, age 18, unknown 119.3
Periaquaductal grey, dorsal
nTPM: 118.9
2464 Female, age 72, unknown 122.6
1840 Male, age 53, unknown 119.6
1831 Male, age 72, unknown 118.3
2850 Male, age 76, both hemispheres 115.2
Periaquaductal grey, lateral
nTPM: 119.2
2272 Male, age 74, both hemispheres 123.4
2053 Male, age 18, unknown 118.8
2140 Male, age 76, both hemispheres 115.4
Pretectal area
nTPM: 125.5
1817 Female, age 42, unknown 134.5
2007 Male, age 72, unknown 132.2
2667 Female, age 75, unknown 129.1
1816 Male, age 51, unknown 128.0
1944 Female, age 72, unknown 126.7
2273 Male, age 74, both hemispheres 126.2
1815 Male, age 53, unknown 125.6
2224 Female, age 72, unknown 122.9
2825 Male, age 18, unknown 119.4
2316 Male, age 76, right hemisphere 118.6
2407 Male, age 75, both hemispheres 117.4
Red nucleus
nTPM: 126.1
1821 Female, age 72, unknown 132.0
2503 Female, age 72, unknown 129.2
1904 Male, age 53, unknown 128.4
2785 Male, age 18, unknown 127.4
2769 Male, age 72, unknown 126.7
2227 Male, age 72, unknown 126.5
2725 Female, age 75, unknown 126.4
1954 Female, age 42, unknown 126.0
1865 Male, age 51, unknown 123.8
2823 Male, age 76, right hemisphere 123.4
2588 Male, age 74, left hemisphere 123.1
2584 Male, age 75, left hemisphere 119.8
Substantia nigra
nTPM: 127.8
1916 Female, age 42, unknown 134.8
1851 Male, age 51, unknown 133.4
2409 Female, age 72, unknown 131.3
1889 Female, age 72, unknown 130.9
2241 Male, age 72, unknown 129.4
1941 Male, age 53, unknown 126.0
2699 Male, age 18, unknown 124.8
2590 Female, age 75, unknown 123.5
2583 Male, age 75, right hemisphere 123.3
2665 Male, age 74, both hemispheres 120.5
Superior colliculus
nTPM: 122.3
2087 Female, age 72, unknown 127.9
1796 Male, age 53, unknown 124.1
2261 Male, age 18, unknown 123.8
2587 Male, age 74, left hemisphere 123.4
1995 Male, age 72, unknown 122.2
2668 Female, age 75, unknown 122.1
1913 Female, age 42, unknown 121.8
2664 Male, age 75, both hemispheres 120.0
1839 Male, age 51, unknown 119.4
1895 Male, age 76, right hemisphere 118.6
Ventral tegmental area
nTPM: 127.0
2410 Female, age 72, unknown 133.3
1915 Female, age 42, unknown 129.6
2223 Female, age 72, unknown 126.8
1942 Male, age 51, unknown 125.2
2021 Male, age 53, unknown 123.7
2218 Male, age 76, both hemispheres 123.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.1
Samples: 139

Max nTPM: 373.6
Min nTPM: 51.9
Std nTPM: 38.1
Median nTPM: 101.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 373.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 280.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 232.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 207.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 184.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 181.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 177.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 165.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 164.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 153.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 153.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.0
FF:10158-103A5 76 years, female 49.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.1
Pig sample Sample description nTPM
Midbrain
nTPM: 54.1
Samples: 4

Max nTPM: 70.5
Min nTPM: 40.7
Sample A Female 70.5
Sample B Female 51.8
Sample C Male 53.3
Sample D Male 40.7
Periaqueductal gray
nTPM: 43.6
Samples: 3

Max nTPM: 46.6
Min nTPM: 38.1
Sample B Female 46.2
Sample C Male 46.6
Sample D Male 38.1
Substantia nigra
nTPM: 50.2
Samples: 4

Max nTPM: 71.2
Min nTPM: 42.4
Sample A Female 71.2
Sample B Female 44.2
Sample C Male 42.9
Sample D Male 42.4
Superior colliculi
nTPM: 53.8
Samples: 4

Max nTPM: 69.9
Min nTPM: 45.2
Sample A Female 69.9
Sample B Female 50.8
Sample C Male 49.3
Sample D Male 45.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.5
Samples: 4

Max nTPM: 99.8
Min nTPM: 82.3
Sample A Male 99.8
Sample B Male 82.6
Sample C Female 82.3
Sample D Female 89.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69671869 Antisense, RP_050428_02_E06, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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