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SDF2L1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.2 nTPM
HPA:16.2 nTPM
GTEx:25.7 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Mouse:10.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.2
2586 Male, age 75, left hemisphere 16.1
2411 Female, age 72, unknown 15.1
1870 Female, age 42, unknown 14.6
1827 Male, age 72, unknown 14.4
2019 Male, age 18, unknown 14.4
1833 Male, age 53, unknown 13.8
1830 Male, age 51, unknown 13.7
2828 Female, age 72, unknown 13.7
2666 Male, age 74, left hemisphere 13.5
2219 Male, age 76, both hemispheres 12.5
Dorsal raphe nucleus
nTPM: 15.1
2298 Female, age 72, unknown 17.3
1828 Male, age 53, unknown 15.1
2016 Female, age 72, unknown 14.9
2047 Male, age 72, unknown 14.2
2750 Male, age 76, both hemispheres 14.2
Inferior colliculus
nTPM: 13.5
2097 Female, age 72, unknown 14.4
1890 Male, age 53, unknown 13.6
1848 Female, age 42, unknown 13.2
2849 Male, age 72, unknown 12.8
Median raphe nucleus
nTPM: 14.7
2220 Male, age 76, midline 14.7
Pedunculopontine tegmental nucleus
nTPM: 15.1
2338 Male, age 61, both hemispheres 16.0
2334 Male, age 80, both hemispheres 15.9
1921 Female, age 85, both hemispheres 13.6
Periaquaductal grey, anterior
nTPM: 16.2
1947 Male, age 18, unknown 16.7
2502 Female, age 75, unknown 16.7
1795 Male, age 51, unknown 15.0
Periaquaductal grey, dorsal
nTPM: 13.8
2850 Male, age 76, both hemispheres 14.4
1840 Male, age 53, unknown 13.9
1831 Male, age 72, unknown 13.6
2464 Female, age 72, unknown 13.2
Periaquaductal grey, lateral
nTPM: 13.6
2140 Male, age 76, both hemispheres 14.1
2272 Male, age 74, both hemispheres 14.1
2053 Male, age 18, unknown 12.7
Pretectal area
nTPM: 14.3
2007 Male, age 72, unknown 16.0
2273 Male, age 74, both hemispheres 15.1
2224 Female, age 72, unknown 14.9
1816 Male, age 51, unknown 14.2
1817 Female, age 42, unknown 14.2
1815 Male, age 53, unknown 14.0
1944 Female, age 72, unknown 14.0
2825 Male, age 18, unknown 13.8
2407 Male, age 75, both hemispheres 13.7
2667 Female, age 75, unknown 13.6
2316 Male, age 76, right hemisphere 13.4
Red nucleus
nTPM: 14.8
2503 Female, age 72, unknown 16.7
2227 Male, age 72, unknown 15.8
2725 Female, age 75, unknown 15.6
2785 Male, age 18, unknown 15.3
1954 Female, age 42, unknown 15.2
2769 Male, age 72, unknown 15.0
2584 Male, age 75, left hemisphere 14.6
1904 Male, age 53, unknown 14.4
2588 Male, age 74, left hemisphere 14.3
1865 Male, age 51, unknown 14.2
1821 Female, age 72, unknown 13.7
2823 Male, age 76, right hemisphere 13.3
Substantia nigra
nTPM: 14.1
1916 Female, age 42, unknown 16.6
1851 Male, age 51, unknown 15.8
1941 Male, age 53, unknown 14.3
2583 Male, age 75, right hemisphere 14.1
2665 Male, age 74, both hemispheres 14.0
1889 Female, age 72, unknown 13.8
2699 Male, age 18, unknown 13.5
2241 Male, age 72, unknown 13.0
2590 Female, age 75, unknown 13.0
2409 Female, age 72, unknown 12.7
Superior colliculus
nTPM: 13.7
1796 Male, age 53, unknown 15.0
2261 Male, age 18, unknown 14.5
1913 Female, age 42, unknown 14.4
2668 Female, age 75, unknown 14.2
1995 Male, age 72, unknown 13.6
2587 Male, age 74, left hemisphere 13.5
2087 Female, age 72, unknown 13.2
2664 Male, age 75, both hemispheres 13.1
1839 Male, age 51, unknown 13.0
1895 Male, age 76, right hemisphere 12.6
Ventral tegmental area
nTPM: 14.4
1915 Female, age 42, unknown 15.8
1942 Male, age 51, unknown 15.6
2410 Female, age 72, unknown 14.3
2223 Female, age 72, unknown 13.8
2021 Male, age 53, unknown 13.4
2218 Male, age 76, both hemispheres 13.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.7
Samples: 139

Max nTPM: 100.6
Min nTPM: 8.2
Std nTPM: 15.9
Median nTPM: 20.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 100.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 90.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 81.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 79.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 75.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 73.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 68.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 55.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 51.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 50.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 13.7
Min nTPM: 6.6
Sample A Male 7.7
Sample B Male 6.6
Sample C Female 12.3
Sample D Female 13.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71656749 Antisense, RP_050927_04_C04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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