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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.6 nTPM
HPA:28.6 nTPM
GTEx:42.2 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:0.4 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 28.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 27.3
2288 Male, age 75, left hemisphere 31.9
2846 Female, age 79, unknown 27.9
2481 Female, age 94, left hemisphere 27.2
1857 Female, age 85, left hemisphere 26.8
2290 Female, age 72, unknown 26.7
1854 Male, age 80, left hemisphere 26.5
1781 Male, age 74, unknown 26.1
2289 Male, age 61, right hemisphere 25.4
Claustrum
nTPM: 25.6
2392 Female, age 94, both hemispheres 30.2
1956 Male, age 74, unknown 27.4
2196 Female, age 79, unknown 26.1
2292 Female, age 85, both hemispheres 25.3
2198 Male, age 80, both hemispheres 25.1
2491 Male, age 75, both hemispheres 25.0
2284 Female, age 91, both hemispheres 24.6
2568 Male, age 61, both hemispheres 23.6
2645 Female, age 72, unknown 23.6
Globus pallidus, externus
nTPM: 26.9
2395 Male, age 75, both hemispheres 31.4
1996 Male, age 80, right hemisphere 28.9
2772 Female, age 79, unknown 28.2
2567 Female, age 72, unknown 23.5
2646 Male, age 61, right hemisphere 22.5
Globus pallidus, internus
nTPM: 28.6
2287 Male, age 75, right hemisphere 32.0
2778 Female, age 91, both hemispheres 30.1
2111 Female, age 85, right hemisphere 28.9
2037 Male, age 80, right hemisphere 28.4
1818 Male, age 74, unknown 28.2
2483 Female, age 94, right hemisphere 28.2
2566 Female, age 72, unknown 24.2
Nucleus accumbens
nTPM: 28.0
2286 Male, age 75, left hemisphere 31.3
2391 Female, age 94, left hemisphere 29.2
1856 Female, age 91, right hemisphere 28.8
1806 Female, age 85, left hemisphere 28.5
2824 Male, age 61, right hemisphere 28.1
2698 Female, age 72, unknown 26.4
1783 Male, age 74, unknown 26.0
2732 Male, age 80, right hemisphere 25.8
Nucleus basalis of Meynert
nTPM: 25.4
2821 Male, age 75, both hemispheres 28.0
2484 Female, age 94, left hemisphere 26.7
2393 Male, age 80, right hemisphere 25.9
2569 Male, age 61, both hemispheres 21.0
Nucleus of the diagonal band
nTPM: 27.2
2029 Male, age 61, right hemisphere 27.7
1812 Female, age 91, both hemispheres 27.6
2775 Male, age 80, right hemisphere 27.5
1979 Male, age 74, unknown 27.0
2195 Female, age 85, both hemispheres 26.2
Olfactory tubercle
nTPM: 27.6
1846 Male, age 80, right hemisphere 29.0
2487 Female, age 94, left hemisphere 28.2
1998 Female, age 91, both hemispheres 27.9
2856 Male, age 75, right hemisphere 25.4
Putamen
nTPM: 26.2
2482 Female, age 94, left hemisphere 28.6
1937 Female, age 91, right hemisphere 28.2
2466 Female, age 79, unknown 27.6
1838 Male, age 80, right hemisphere 26.2
1829 Male, age 74, unknown 25.5
2489 Female, age 72, unknown 24.1
2647 Male, age 75, left hemisphere 23.3
Septal nuclei
nTPM: 27.0
2031 Female, age 72, unknown 28.6
2629 Female, age 94, right hemisphere 28.3
2009 Female, age 91, both hemispheres 27.9
2199 Male, age 80, right hemisphere 26.8
1960 Male, age 74, unknown 26.2
2394 Male, age 61, left hemisphere 25.9
2059 Female, age 85, both hemispheres 25.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.2
Samples: 246

Max nTPM: 75.9
Min nTPM: 28.2
Std nTPM: 6.8
Median nTPM: 41.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 75.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 68.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 68.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 59.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 58.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 58.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 58.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 55.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 54.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 54.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 53.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.2
Samples: 246

Max nTPM: 79.1
Min nTPM: 23.0
Std nTPM: 7.4
Median nTPM: 41.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 79.1
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 69.2
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 67.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 65.4
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 61.9
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 60.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 59.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 58.7
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 58.4
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 58.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 56.9
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Brain - Putamen (basal ganglia)
Average nTPM: 41.5
Samples: 205

Max nTPM: 78.6
Min nTPM: 21.6
Std nTPM: 7.2
Median nTPM: 40.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 78.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 64.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 59.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 59.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 58.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 57.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 57.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 57.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 56.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 56.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 54.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 58.0
FF:10164-103B2 76 years, female 58.0
Globus pallidus
Scaled Tags Per Million: 72.0
FF:10175-103C4 60 years, female 85.2
FF:10161-103A8 76 years, female 58.9
Nucleus accumbens
Scaled Tags Per Million: 66.0
FF:10037-101F1 23-56 years, mixed 66.0
Putamen
Scaled Tags Per Million: 64.7
FF:10176-103C5 60 years, female 64.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.5
Pig sample Sample description nTPM
Caudate
nTPM: 10.7
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.6
Sample A Female 11.8
Sample B Female 9.6
Sample C Male 11.3
Sample D Male 10.2
Putamen
nTPM: 11.7
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.0
Sample A Female 11.7
Sample B Female 10.2
Sample C Male 14.9
Sample D Male 10.0
Septum
nTPM: 12.5
Samples: 4

Max nTPM: 13.2
Min nTPM: 11.9
Sample A Female 12.2
Sample B Female 11.9
Sample C Male 13.2
Sample D Male 12.6
Ventral pallidum
nTPM: 10.9
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.6
Sample A Female 10.5
Sample B Female 12.9
Sample C Male 9.6
Sample D Male 10.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.5
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.2
Sample A Male 8.2
Sample B Male 10.0
Sample C Female 10.4
Sample D Female 9.2
Septum
nTPM: 11.4
Samples: 4

Max nTPM: 12.8
Min nTPM: 10.6
Sample A Male 11.3
Sample B Male 10.6
Sample C Female 11.0
Sample D Female 12.8
Ventral forebrain
nTPM: 9.8
Samples: 4

Max nTPM: 10.4
Min nTPM: 9.1
Sample A Male 10.4
Sample B Male 9.8
Sample C Female 9.1
Sample D Female 9.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
75826638 Antisense, RP_060601_01_C06, Mouse strain C57BL/6J (56 days, male) 0.2
Striatum
Expression energy: 0.2
75826638 Antisense, RP_060601_01_C06, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
75826638 Antisense, RP_060601_01_C06, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
75826638 Antisense, RP_060601_01_C06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.