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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.9 nTPM
HPA:23.9 nTPM
GTEx:32.1 nTPM
FANTOM5:153.4 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:12.4 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.5
1870 Female, age 42, unknown 22.6
2586 Male, age 75, left hemisphere 22.6
2219 Male, age 76, both hemispheres 21.9
2666 Male, age 74, left hemisphere 21.8
2828 Female, age 72, unknown 21.0
1833 Male, age 53, unknown 20.7
1827 Male, age 72, unknown 20.0
1830 Male, age 51, unknown 19.3
2411 Female, age 72, unknown 18.4
2019 Male, age 18, unknown 16.3
Dorsal raphe nucleus
nTPM: 18.1
1828 Male, age 53, unknown 19.8
2750 Male, age 76, both hemispheres 19.7
2047 Male, age 72, unknown 18.7
2016 Female, age 72, unknown 17.5
2298 Female, age 72, unknown 14.7
Inferior colliculus
nTPM: 22.6
2849 Male, age 72, unknown 29.7
1848 Female, age 42, unknown 22.7
1890 Male, age 53, unknown 21.1
2097 Female, age 72, unknown 16.9
Median raphe nucleus
nTPM: 23.9
2220 Male, age 76, midline 23.9
Pedunculopontine tegmental nucleus
nTPM: 21.3
2338 Male, age 61, both hemispheres 23.7
2334 Male, age 80, both hemispheres 20.4
1921 Female, age 85, both hemispheres 19.8
Periaquaductal grey, anterior
nTPM: 18.7
1795 Male, age 51, unknown 20.1
2502 Female, age 75, unknown 18.3
1947 Male, age 18, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 23.2
2850 Male, age 76, both hemispheres 29.0
1831 Male, age 72, unknown 21.8
1840 Male, age 53, unknown 21.4
2464 Female, age 72, unknown 20.5
Periaquaductal grey, lateral
nTPM: 20.7
2140 Male, age 76, both hemispheres 26.7
2053 Male, age 18, unknown 18.9
2272 Male, age 74, both hemispheres 16.7
Pretectal area
nTPM: 20.6
2667 Female, age 75, unknown 23.6
2825 Male, age 18, unknown 22.9
2316 Male, age 76, right hemisphere 22.3
1944 Female, age 72, unknown 21.9
2407 Male, age 75, both hemispheres 21.4
1816 Male, age 51, unknown 20.8
1817 Female, age 42, unknown 19.7
2224 Female, age 72, unknown 19.3
1815 Male, age 53, unknown 19.1
2007 Male, age 72, unknown 18.8
2273 Male, age 74, both hemispheres 17.3
Red nucleus
nTPM: 21.9
2503 Female, age 72, unknown 23.9
2725 Female, age 75, unknown 23.5
2227 Male, age 72, unknown 22.9
2823 Male, age 76, right hemisphere 22.6
2588 Male, age 74, left hemisphere 22.5
2769 Male, age 72, unknown 22.4
1865 Male, age 51, unknown 22.0
2785 Male, age 18, unknown 21.7
2584 Male, age 75, left hemisphere 21.4
1954 Female, age 42, unknown 20.5
1904 Male, age 53, unknown 20.2
1821 Female, age 72, unknown 18.7
Substantia nigra
nTPM: 18.9
2699 Male, age 18, unknown 26.8
2665 Male, age 74, both hemispheres 21.1
1916 Female, age 42, unknown 19.3
1889 Female, age 72, unknown 19.0
1941 Male, age 53, unknown 18.8
2590 Female, age 75, unknown 17.6
1851 Male, age 51, unknown 17.5
2583 Male, age 75, right hemisphere 17.2
2409 Female, age 72, unknown 16.1
2241 Male, age 72, unknown 15.3
Superior colliculus
nTPM: 20.0
1895 Male, age 76, right hemisphere 22.8
1796 Male, age 53, unknown 21.4
1913 Female, age 42, unknown 20.7
2664 Male, age 75, both hemispheres 20.7
1839 Male, age 51, unknown 20.5
2087 Female, age 72, unknown 20.4
1995 Male, age 72, unknown 19.1
2587 Male, age 74, left hemisphere 19.0
2261 Male, age 18, unknown 18.0
2668 Female, age 75, unknown 17.5
Ventral tegmental area
nTPM: 19.0
2218 Male, age 76, both hemispheres 21.5
2021 Male, age 53, unknown 20.0
2223 Female, age 72, unknown 19.9
1942 Male, age 51, unknown 18.8
1915 Female, age 42, unknown 18.7
2410 Female, age 72, unknown 15.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 139

Max nTPM: 66.9
Min nTPM: 15.1
Std nTPM: 8.6
Median nTPM: 30.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 66.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 59.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 57.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 49.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 49.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 48.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 46.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 46.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 46.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 45.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.4
FF:10158-103A5 76 years, female 153.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Midbrain
nTPM: 15.0
Samples: 4

Max nTPM: 16.3
Min nTPM: 14.1
Sample A Female 14.2
Sample B Female 14.1
Sample C Male 15.4
Sample D Male 16.3
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 17.9
Min nTPM: 15.1
Sample B Female 15.1
Sample C Male 17.9
Sample D Male 16.4
Substantia nigra
nTPM: 14.4
Samples: 4

Max nTPM: 16.7
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 13.3
Sample C Male 16.7
Sample D Male 16.1
Superior colliculi
nTPM: 14.6
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.8
Sample A Female 14.3
Sample B Female 14.2
Sample C Male 13.8
Sample D Male 16.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 13.8
Min nTPM: 11.2
Sample A Male 13.8
Sample B Male 11.4
Sample C Female 13.4
Sample D Female 11.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69816822 Antisense, RP_050510_01_H11, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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