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LSM7
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:53.9 nTPM
HPA:53.9 nTPM
GTEx:68.9 nTPM
FANTOM5:23.1 Scaled Tags Per Million
Pig:9.3 nTPM
Mouse:117.1 nTPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041850
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.9
Sample id Sample description nTPM
Hippocampus
nTPM: 52.9
1898 Male, age 80, left hemisphere 54.8
2529 Female, age 94, left hemisphere 54.6
2148 Female, age 91, left hemisphere 52.7
2621 Female, age 67, right hemisphere 52.4
1855 Male, age 76, left hemisphere 51.8
1911 Female, age 85, right hemisphere 51.3
Dentate gyrus
nTPM: 52.2
2530 Female, age 94, left hemisphere 54.1
2246 Female, age 85, both hemispheres 53.0
2010 Male, age 76, both hemispheres 52.8
1927 Female, age 91, both hemispheres 52.1
2531 Female, age 67, both hemispheres 51.2
2528 Male, age 74, both hemispheres 50.0
Entorhinal gyrus
nTPM: 53.9
1787 Male, age 76, left hemisphere 56.8
2117 Female, age 91, right hemisphere 56.2
1938 Female, age 85, left hemisphere 54.9
2764 Male, age 80, right hemisphere 53.6
2613 Female, age 94, left hemisphere 51.9
2686 Male, age 75, right hemisphere 50.1
Hippocampus, CA1
nTPM: 53.2
2749 Male, age 80, left hemisphere 58.1
2527 Male, age 74, both hemispheres 55.4
2045 Male, age 76, both hemispheres 52.2
1873 Female, age 85, both hemispheres 50.1
2082 Female, age 91, right hemisphere 50.1
Hippocampus, CA2
nTPM: 53.0
1940 Female, age 85, left hemisphere 54.8
1892 Male, age 76, both hemispheres 54.1
1963 Male, age 80, left hemisphere 53.6
2437 Female, age 94, left hemisphere 53.4
2249 Male, age 74, both hemispheres 51.9
2113 Female, age 91, right hemisphere 50.5
Hippocampus, CA3
nTPM: 51.4
1891 Female, age 85, both hemispheres 52.3
1867 Male, age 76, both hemispheres 52.0
2620 Female, age 94, left hemisphere 51.8
2436 Male, age 74, both hemispheres 51.1
2861 Female, age 67, both hemispheres 50.9
2137 Male, age 80, left hemisphere 50.6
Parahippocampal cortex
nTPM: 51.9
2245 Female, age 91, both hemispheres 54.7
2250 Female, age 67, right hemisphere 54.5
1850 Male, age 80, both hemispheres 53.0
1933 Female, age 85, both hemispheres 52.3
2692 Male, age 74, both hemispheres 52.2
2532 Female, age 72, left hemisphere 51.9
1990 Female, age 91, right hemisphere 51.5
2018 Male, age 76, both hemispheres 51.3
2622 Female, age 67, right hemisphere 50.2
2693 Female, age 94, both hemispheres 47.5
Perirhinal gyrus
nTPM: 53.5
1794 Male, age 80, right hemisphere 57.7
1847 Female, age 91, left hemisphere 54.9
2521 Female, age 94, right hemisphere 52.1
2848 Male, age 76, right hemisphere 51.4
1841 Female, age 85, right hemisphere 51.3
Subiculum
nTPM: 51.8
1901 Male, age 80, both hemispheres 53.8
2619 Male, age 74, both hemispheres 53.6
1977 Female, age 85, both hemispheres 53.2
2438 Female, age 94, left hemisphere 50.7
2042 Male, age 76, both hemispheres 50.0
2729 Female, age 91, right hemisphere 49.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.9
Samples: 197

Max nTPM: 162.0
Min nTPM: 27.7
Std nTPM: 18.6
Median nTPM: 66.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 162.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 151.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 134.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 120.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 117.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 116.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 111.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 110.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 105.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 103.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 101.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.1
FF:10169-103B7 60 years, female 28.2
FF:10153-102I9 76 years, female 17.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.3
Samples: 4

Max nTPM: 12.0
Min nTPM: 7.2
Sample A Female 12.0
Sample B Female 7.2
Sample C Male 10.5
Sample D Male 7.6
Entorhinal cortex
nTPM: 8.5
Samples: 4

Max nTPM: 11.1
Min nTPM: 6.7
Sample A Female 11.1
Sample B Female 9.4
Sample C Male 6.7
Sample D Male 6.9
Subiculum
nTPM: 7.9
Samples: 4

Max nTPM: 11.5
Min nTPM: 6.0
Sample A Female 11.5
Sample B Female 7.5
Sample C Male 6.6
Sample D Male 6.0
Ventral hippocampus
nTPM: 8.5
Samples: 4

Max nTPM: 10.6
Min nTPM: 6.2
Sample A Female 9.0
Sample B Female 6.2
Sample C Male 10.6
Sample D Male 8.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 117.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 117.1
Samples: 4

Max nTPM: 124.0
Min nTPM: 105.3
Sample A Male 123.3
Sample B Male 124.0
Sample C Female 115.6
Sample D Female 105.3
Hippocampal formation
nTPM: 112.3
Samples: 4

Max nTPM: 123.2
Min nTPM: 103.9
Sample A Male 123.2
Sample B Male 103.9
Sample C Female 109.8
Sample D Female 112.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.