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LSM7
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.4 nTPM
HPA:58.4 nTPM
GTEx:79.1 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:11.7 nTPM
Mouse:80.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.3
1870 Female, age 42, unknown 53.9
2219 Male, age 76, both hemispheres 53.8
2828 Female, age 72, unknown 52.8
2586 Male, age 75, left hemisphere 52.6
2411 Female, age 72, unknown 52.2
1827 Male, age 72, unknown 51.9
1830 Male, age 51, unknown 51.8
1833 Male, age 53, unknown 51.4
2019 Male, age 18, unknown 51.3
2666 Male, age 74, left hemisphere 51.1
Dorsal raphe nucleus
nTPM: 54.6
2298 Female, age 72, unknown 56.8
2750 Male, age 76, both hemispheres 56.4
2047 Male, age 72, unknown 55.8
1828 Male, age 53, unknown 53.2
2016 Female, age 72, unknown 50.6
Inferior colliculus
nTPM: 52.1
2097 Female, age 72, unknown 53.0
1890 Male, age 53, unknown 52.4
2849 Male, age 72, unknown 52.2
1848 Female, age 42, unknown 50.9
Median raphe nucleus
nTPM: 58.4
2220 Male, age 76, midline 58.4
Pedunculopontine tegmental nucleus
nTPM: 56.2
2334 Male, age 80, both hemispheres 56.7
2338 Male, age 61, both hemispheres 56.1
1921 Female, age 85, both hemispheres 55.8
Periaquaductal grey, anterior
nTPM: 53.6
1947 Male, age 18, unknown 54.2
2502 Female, age 75, unknown 53.4
1795 Male, age 51, unknown 53.2
Periaquaductal grey, dorsal
nTPM: 51.4
2850 Male, age 76, both hemispheres 53.7
1840 Male, age 53, unknown 52.1
1831 Male, age 72, unknown 51.2
2464 Female, age 72, unknown 48.8
Periaquaductal grey, lateral
nTPM: 52.4
2140 Male, age 76, both hemispheres 52.9
2272 Male, age 74, both hemispheres 52.9
2053 Male, age 18, unknown 51.3
Pretectal area
nTPM: 53.2
1817 Female, age 42, unknown 55.5
2224 Female, age 72, unknown 55.4
2667 Female, age 75, unknown 54.5
1816 Male, age 51, unknown 54.3
2273 Male, age 74, both hemispheres 54.3
1944 Female, age 72, unknown 53.9
2007 Male, age 72, unknown 53.9
2825 Male, age 18, unknown 52.4
1815 Male, age 53, unknown 51.8
2407 Male, age 75, both hemispheres 49.4
2316 Male, age 76, right hemisphere 49.2
Red nucleus
nTPM: 53.6
1821 Female, age 72, unknown 57.0
1865 Male, age 51, unknown 55.8
2503 Female, age 72, unknown 55.4
2785 Male, age 18, unknown 55.1
1954 Female, age 42, unknown 54.9
1904 Male, age 53, unknown 54.5
2227 Male, age 72, unknown 53.9
2769 Male, age 72, unknown 53.4
2823 Male, age 76, right hemisphere 53.0
2725 Female, age 75, unknown 52.7
2584 Male, age 75, left hemisphere 50.6
2588 Male, age 74, left hemisphere 47.6
Substantia nigra
nTPM: 54.0
1916 Female, age 42, unknown 60.8
2699 Male, age 18, unknown 54.8
1851 Male, age 51, unknown 54.7
1889 Female, age 72, unknown 53.9
1941 Male, age 53, unknown 53.9
2665 Male, age 74, both hemispheres 53.9
2409 Female, age 72, unknown 53.4
2590 Female, age 75, unknown 52.3
2241 Male, age 72, unknown 51.7
2583 Male, age 75, right hemisphere 50.2
Superior colliculus
nTPM: 51.5
2587 Male, age 74, left hemisphere 54.2
1796 Male, age 53, unknown 54.1
1913 Female, age 42, unknown 52.3
2668 Female, age 75, unknown 51.9
2087 Female, age 72, unknown 51.8
1895 Male, age 76, right hemisphere 51.1
2261 Male, age 18, unknown 51.1
1995 Male, age 72, unknown 51.0
1839 Male, age 51, unknown 49.9
2664 Male, age 75, both hemispheres 47.9
Ventral tegmental area
nTPM: 55.0
2218 Male, age 76, both hemispheres 58.3
1915 Female, age 42, unknown 57.0
2223 Female, age 72, unknown 55.5
2410 Female, age 72, unknown 53.8
1942 Male, age 51, unknown 53.1
2021 Male, age 53, unknown 52.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.1
Samples: 139

Max nTPM: 160.5
Min nTPM: 33.1
Std nTPM: 19.9
Median nTPM: 76.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 160.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 133.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 132.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 127.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 125.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 125.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 120.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 117.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 117.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 114.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 110.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.8
FF:10158-103A5 76 years, female 21.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.7
Pig sample Sample description nTPM
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 15.4
Min nTPM: 8.9
Sample A Female 15.4
Sample B Female 12.0
Sample C Male 10.6
Sample D Male 8.9
Periaqueductal gray
nTPM: 10.0
Samples: 3

Max nTPM: 12.1
Min nTPM: 7.6
Sample B Female 10.2
Sample C Male 12.1
Sample D Male 7.6
Substantia nigra
nTPM: 11.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 7.4
Sample A Female 16.5
Sample B Female 9.5
Sample C Male 13.4
Sample D Male 7.4
Superior colliculi
nTPM: 11.6
Samples: 4

Max nTPM: 16.7
Min nTPM: 7.7
Sample A Female 16.7
Sample B Female 7.7
Sample C Male 11.8
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 80.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.4
Samples: 4

Max nTPM: 102.3
Min nTPM: 59.4
Sample A Male 102.3
Sample B Male 72.4
Sample C Female 59.4
Sample D Female 87.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.