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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:40.2 nTPM
HPA:40.2 nTPM
GTEx:53.1 nTPM
FANTOM5:207.1 Scaled Tags Per Million
Pig:55.2 nTPM
Mouse:38.7 nTPM
Allen mouse:10.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA067045Antibody CAB070846
Glial cells MediumNot detected
Neuronal cells HighLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.7
2288 Male, age 75, left hemisphere 35.9
2289 Male, age 61, right hemisphere 35.1
2290 Female, age 72, unknown 34.2
1781 Male, age 74, unknown 33.9
1854 Male, age 80, left hemisphere 33.4
2481 Female, age 94, left hemisphere 33.1
1857 Female, age 85, left hemisphere 32.9
2846 Female, age 79, unknown 31.2
Claustrum
nTPM: 37.0
2568 Male, age 61, both hemispheres 43.2
2198 Male, age 80, both hemispheres 39.1
2491 Male, age 75, both hemispheres 38.1
2645 Female, age 72, unknown 37.7
1956 Male, age 74, unknown 36.9
2284 Female, age 91, both hemispheres 35.5
2292 Female, age 85, both hemispheres 34.8
2392 Female, age 94, both hemispheres 34.6
2196 Female, age 79, unknown 33.3
Globus pallidus, externus
nTPM: 35.5
2772 Female, age 79, unknown 39.8
2646 Male, age 61, right hemisphere 35.4
2395 Male, age 75, both hemispheres 34.8
2567 Female, age 72, unknown 34.8
1996 Male, age 80, right hemisphere 32.9
Globus pallidus, internus
nTPM: 34.7
1818 Male, age 74, unknown 37.6
2483 Female, age 94, right hemisphere 36.0
2287 Male, age 75, right hemisphere 34.6
2566 Female, age 72, unknown 34.5
2037 Male, age 80, right hemisphere 33.9
2778 Female, age 91, both hemispheres 33.6
2111 Female, age 85, right hemisphere 33.0
Nucleus accumbens
nTPM: 36.1
2824 Male, age 61, right hemisphere 40.2
1856 Female, age 91, right hemisphere 39.7
2286 Male, age 75, left hemisphere 37.5
2391 Female, age 94, left hemisphere 36.9
1783 Male, age 74, unknown 36.5
1806 Female, age 85, left hemisphere 33.8
2698 Female, age 72, unknown 33.8
2732 Male, age 80, right hemisphere 30.8
Nucleus basalis of Meynert
nTPM: 33.6
2821 Male, age 75, both hemispheres 35.1
2569 Male, age 61, both hemispheres 34.4
2393 Male, age 80, right hemisphere 32.5
2484 Female, age 94, left hemisphere 32.5
Nucleus of the diagonal band
nTPM: 40.2
2775 Male, age 80, right hemisphere 43.7
1812 Female, age 91, both hemispheres 43.1
2029 Male, age 61, right hemisphere 40.9
2195 Female, age 85, both hemispheres 40.0
1979 Male, age 74, unknown 33.2
Olfactory tubercle
nTPM: 39.4
1998 Female, age 91, both hemispheres 42.5
1846 Male, age 80, right hemisphere 40.1
2487 Female, age 94, left hemisphere 38.7
2856 Male, age 75, right hemisphere 36.1
Putamen
nTPM: 35.2
2647 Male, age 75, left hemisphere 37.3
1937 Female, age 91, right hemisphere 37.0
2489 Female, age 72, unknown 35.8
1838 Male, age 80, right hemisphere 35.5
2466 Female, age 79, unknown 34.7
2482 Female, age 94, left hemisphere 33.4
1829 Male, age 74, unknown 32.7
Septal nuclei
nTPM: 37.3
1960 Male, age 74, unknown 48.0
2031 Female, age 72, unknown 40.3
2009 Female, age 91, both hemispheres 38.0
2059 Female, age 85, both hemispheres 37.6
2629 Female, age 94, right hemisphere 34.7
2394 Male, age 61, left hemisphere 32.1
2199 Male, age 80, right hemisphere 30.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 53.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.1
Samples: 246

Max nTPM: 85.6
Min nTPM: 17.0
Std nTPM: 12.2
Median nTPM: 47.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 85.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 84.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 82.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 80.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 78.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 77.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 75.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 75.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 75.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 74.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 73.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 53.1
Samples: 246

Max nTPM: 90.8
Min nTPM: 14.6
Std nTPM: 14.2
Median nTPM: 54.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 90.8
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 89.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 86.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 79.3
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 78.8
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 78.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 77.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 77.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 77.5
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 76.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 75.7
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Brain - Putamen (basal ganglia)
Average nTPM: 50.1
Samples: 205

Max nTPM: 82.9
Min nTPM: 23.5
Std nTPM: 11.5
Median nTPM: 49.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 82.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 82.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 79.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 78.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 75.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 74.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 72.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 72.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 72.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 70.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 70.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 207.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 146.9
FF:10164-103B2 76 years, female 146.9
Globus pallidus
Scaled Tags Per Million: 197.3
FF:10175-103C4 60 years, female 251.8
FF:10161-103A8 76 years, female 142.9
Nucleus accumbens
Scaled Tags Per Million: 175.4
FF:10037-101F1 23-56 years, mixed 175.4
Putamen
Scaled Tags Per Million: 207.1
FF:10176-103C5 60 years, female 207.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.2
Pig sample Sample description nTPM
Caudate
nTPM: 48.6
Samples: 4

Max nTPM: 58.2
Min nTPM: 38.8
Sample A Female 38.8
Sample B Female 53.0
Sample C Male 58.2
Sample D Male 44.2
Putamen
nTPM: 55.2
Samples: 4

Max nTPM: 74.3
Min nTPM: 41.7
Sample A Female 52.9
Sample B Female 41.7
Sample C Male 74.3
Sample D Male 52.0
Septum
nTPM: 48.5
Samples: 4

Max nTPM: 53.3
Min nTPM: 43.5
Sample A Female 51.2
Sample B Female 43.5
Sample C Male 53.3
Sample D Male 45.9
Ventral pallidum
nTPM: 50.8
Samples: 4

Max nTPM: 66.6
Min nTPM: 39.7
Sample A Female 41.1
Sample B Female 55.8
Sample C Male 66.6
Sample D Male 39.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 31.5
Samples: 4

Max nTPM: 46.8
Min nTPM: 24.3
Sample A Male 29.4
Sample B Male 46.8
Sample C Female 24.3
Sample D Female 25.3
Septum
nTPM: 38.7
Samples: 4

Max nTPM: 43.9
Min nTPM: 34.0
Sample A Male 43.9
Sample B Male 34.0
Sample C Female 42.0
Sample D Female 34.7
Ventral forebrain
nTPM: 38.3
Samples: 4

Max nTPM: 47.2
Min nTPM: 33.0
Sample A Male 47.2
Sample B Male 34.6
Sample C Female 38.4
Sample D Female 33.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.7
67881785 Antisense, RP_040923_01_A03, Mouse strain C57BL/6J (56 days, male) 10.6
74658173 Antisense, RP_060220_02_D01, Mouse strain C57BL/6J (56 days, male) 8.9
Pallidum
Expression energy: 10.2
74658173 Antisense, RP_060220_02_D01, Mouse strain C57BL/6J (56 days, male) 10.2
67881785 Antisense, RP_040923_01_A03, Mouse strain C57BL/6J (56 days, male) 10.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.