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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.4 nTPM
HPA:39.4 nTPM
GTEx:53.0 nTPM
FANTOM5:135.3 Scaled Tags Per Million
Pig:74.0 nTPM
Mouse:32.0 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.2
2219 Male, age 76, both hemispheres 39.1
2019 Male, age 18, unknown 37.1
1827 Male, age 72, unknown 36.2
2828 Female, age 72, unknown 34.2
1870 Female, age 42, unknown 33.9
2666 Male, age 74, left hemisphere 33.7
2411 Female, age 72, unknown 33.6
2586 Male, age 75, left hemisphere 32.0
1833 Male, age 53, unknown 31.2
1830 Male, age 51, unknown 31.1
Dorsal raphe nucleus
nTPM: 35.4
2047 Male, age 72, unknown 38.5
1828 Male, age 53, unknown 37.8
2750 Male, age 76, both hemispheres 36.1
2298 Female, age 72, unknown 34.3
2016 Female, age 72, unknown 30.1
Inferior colliculus
nTPM: 31.5
2097 Female, age 72, unknown 32.7
1890 Male, age 53, unknown 32.5
1848 Female, age 42, unknown 31.1
2849 Male, age 72, unknown 29.7
Median raphe nucleus
nTPM: 35.0
2220 Male, age 76, midline 35.0
Pedunculopontine tegmental nucleus
nTPM: 34.6
1921 Female, age 85, both hemispheres 36.2
2334 Male, age 80, both hemispheres 34.5
2338 Male, age 61, both hemispheres 33.0
Periaquaductal grey, anterior
nTPM: 33.6
1795 Male, age 51, unknown 35.3
1947 Male, age 18, unknown 34.9
2502 Female, age 75, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 30.7
1840 Male, age 53, unknown 32.0
2464 Female, age 72, unknown 31.3
1831 Male, age 72, unknown 30.3
2850 Male, age 76, both hemispheres 29.4
Periaquaductal grey, lateral
nTPM: 30.2
2272 Male, age 74, both hemispheres 31.6
2140 Male, age 76, both hemispheres 30.0
2053 Male, age 18, unknown 29.1
Pretectal area
nTPM: 35.8
2007 Male, age 72, unknown 41.5
2667 Female, age 75, unknown 41.1
1816 Male, age 51, unknown 40.0
1817 Female, age 42, unknown 38.6
1944 Female, age 72, unknown 37.5
1815 Male, age 53, unknown 36.2
2407 Male, age 75, both hemispheres 33.8
2825 Male, age 18, unknown 32.4
2224 Female, age 72, unknown 32.2
2273 Male, age 74, both hemispheres 30.5
2316 Male, age 76, right hemisphere 30.5
Red nucleus
nTPM: 34.7
1821 Female, age 72, unknown 38.8
2584 Male, age 75, left hemisphere 37.5
2588 Male, age 74, left hemisphere 37.3
2725 Female, age 75, unknown 36.6
2823 Male, age 76, right hemisphere 34.6
2503 Female, age 72, unknown 34.2
2785 Male, age 18, unknown 33.9
1865 Male, age 51, unknown 33.8
1904 Male, age 53, unknown 33.1
2769 Male, age 72, unknown 32.2
1954 Female, age 42, unknown 32.0
2227 Male, age 72, unknown 32.0
Substantia nigra
nTPM: 39.4
1916 Female, age 42, unknown 48.9
1851 Male, age 51, unknown 44.6
1941 Male, age 53, unknown 41.7
2409 Female, age 72, unknown 41.5
1889 Female, age 72, unknown 40.6
2241 Male, age 72, unknown 39.7
2699 Male, age 18, unknown 37.7
2590 Female, age 75, unknown 34.8
2665 Male, age 74, both hemispheres 33.8
2583 Male, age 75, right hemisphere 31.2
Superior colliculus
nTPM: 33.5
2087 Female, age 72, unknown 37.4
2261 Male, age 18, unknown 35.4
1796 Male, age 53, unknown 35.1
1895 Male, age 76, right hemisphere 34.6
2668 Female, age 75, unknown 33.7
2664 Male, age 75, both hemispheres 33.6
2587 Male, age 74, left hemisphere 32.9
1913 Female, age 42, unknown 31.4
1995 Male, age 72, unknown 30.7
1839 Male, age 51, unknown 29.9
Ventral tegmental area
nTPM: 37.0
2218 Male, age 76, both hemispheres 41.3
1915 Female, age 42, unknown 40.7
2410 Female, age 72, unknown 39.0
1942 Male, age 51, unknown 34.8
2223 Female, age 72, unknown 34.6
2021 Male, age 53, unknown 31.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.0
Samples: 139

Max nTPM: 136.7
Min nTPM: 23.3
Std nTPM: 18.4
Median nTPM: 50.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 136.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 118.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 112.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 104.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 101.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 92.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 89.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 81.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 80.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 80.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 79.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.3
FF:10158-103A5 76 years, female 135.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.0
Pig sample Sample description nTPM
Midbrain
nTPM: 68.8
Samples: 4

Max nTPM: 80.9
Min nTPM: 57.7
Sample A Female 72.5
Sample B Female 57.7
Sample C Male 80.9
Sample D Male 63.9
Periaqueductal gray
nTPM: 50.1
Samples: 3

Max nTPM: 57.7
Min nTPM: 42.2
Sample B Female 50.5
Sample C Male 57.7
Sample D Male 42.2
Substantia nigra
nTPM: 61.5
Samples: 4

Max nTPM: 83.0
Min nTPM: 47.0
Sample A Female 83.0
Sample B Female 47.0
Sample C Male 65.8
Sample D Male 50.2
Superior colliculi
nTPM: 74.0
Samples: 4

Max nTPM: 88.8
Min nTPM: 53.1
Sample A Female 87.2
Sample B Female 53.1
Sample C Male 88.8
Sample D Male 67.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.0
Samples: 4

Max nTPM: 37.6
Min nTPM: 26.9
Sample A Male 37.6
Sample B Male 32.2
Sample C Female 31.4
Sample D Female 26.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
67881785 Antisense, RP_040923_01_A03, Mouse strain C57BL/6J (56 days, male) 13.0
74658173 Antisense, RP_060220_02_D01, Mouse strain C57BL/6J (56 days, male) 11.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.