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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:44.8 nTPM
HPA:44.8 nTPM
GTEx:48.2 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:51.2 nTPM
Mouse:50.3 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA005651
Glial cells Medium
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.8
2481 Female, age 94, left hemisphere 44.8
2288 Male, age 75, left hemisphere 41.9
2289 Male, age 61, right hemisphere 41.7
2290 Female, age 72, unknown 40.5
1857 Female, age 85, left hemisphere 40.0
1854 Male, age 80, left hemisphere 39.7
2846 Female, age 79, unknown 39.7
1781 Male, age 74, unknown 38.5
Claustrum
nTPM: 38.6
2491 Male, age 75, both hemispheres 40.6
2198 Male, age 80, both hemispheres 40.1
1956 Male, age 74, unknown 39.2
2292 Female, age 85, both hemispheres 39.1
2196 Female, age 79, unknown 38.9
2284 Female, age 91, both hemispheres 38.4
2568 Male, age 61, both hemispheres 38.2
2645 Female, age 72, unknown 36.7
2392 Female, age 94, both hemispheres 36.6
Globus pallidus, externus
nTPM: 44.8
2646 Male, age 61, right hemisphere 49.2
2772 Female, age 79, unknown 46.3
1996 Male, age 80, right hemisphere 44.0
2567 Female, age 72, unknown 43.4
2395 Male, age 75, both hemispheres 41.0
Globus pallidus, internus
nTPM: 43.4
2483 Female, age 94, right hemisphere 48.5
2287 Male, age 75, right hemisphere 45.4
2778 Female, age 91, both hemispheres 43.8
1818 Male, age 74, unknown 42.7
2111 Female, age 85, right hemisphere 42.7
2566 Female, age 72, unknown 41.5
2037 Male, age 80, right hemisphere 39.5
Nucleus accumbens
nTPM: 39.5
2286 Male, age 75, left hemisphere 41.1
2391 Female, age 94, left hemisphere 40.7
1783 Male, age 74, unknown 39.8
1806 Female, age 85, left hemisphere 39.8
2698 Female, age 72, unknown 39.3
2732 Male, age 80, right hemisphere 39.0
2824 Male, age 61, right hemisphere 38.6
1856 Female, age 91, right hemisphere 37.6
Nucleus basalis of Meynert
nTPM: 41.8
2569 Male, age 61, both hemispheres 51.4
2484 Female, age 94, left hemisphere 39.6
2393 Male, age 80, right hemisphere 38.4
2821 Male, age 75, both hemispheres 37.5
Nucleus of the diagonal band
nTPM: 37.1
2775 Male, age 80, right hemisphere 38.6
1979 Male, age 74, unknown 37.6
1812 Female, age 91, both hemispheres 37.1
2195 Female, age 85, both hemispheres 36.9
2029 Male, age 61, right hemisphere 35.3
Olfactory tubercle
nTPM: 37.1
1846 Male, age 80, right hemisphere 37.6
2856 Male, age 75, right hemisphere 37.1
1998 Female, age 91, both hemispheres 36.8
2487 Female, age 94, left hemisphere 36.8
Putamen
nTPM: 40.8
2482 Female, age 94, left hemisphere 44.1
2647 Male, age 75, left hemisphere 42.5
2489 Female, age 72, unknown 42.3
2466 Female, age 79, unknown 40.0
1829 Male, age 74, unknown 39.9
1937 Female, age 91, right hemisphere 38.7
1838 Male, age 80, right hemisphere 38.1
Septal nuclei
nTPM: 37.7
1960 Male, age 74, unknown 39.3
2394 Male, age 61, left hemisphere 39.0
2059 Female, age 85, both hemispheres 38.5
2199 Male, age 80, right hemisphere 38.3
2031 Female, age 72, unknown 37.3
2009 Female, age 91, both hemispheres 36.2
2629 Female, age 94, right hemisphere 35.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.2
Samples: 246

Max nTPM: 80.6
Min nTPM: 24.8
Std nTPM: 9.5
Median nTPM: 40.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 80.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 77.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 75.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 73.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 71.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 67.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 67.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 64.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 64.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 61.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 61.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.6
Samples: 246

Max nTPM: 76.0
Min nTPM: 19.7
Std nTPM: 9.6
Median nTPM: 39.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 76.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 70.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 70.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 68.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 67.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 67.1
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 66.0
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 65.1
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 65.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 59.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 58.2
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Brain - Putamen (basal ganglia)
Average nTPM: 48.2
Samples: 205

Max nTPM: 96.4
Min nTPM: 23.7
Std nTPM: 10.7
Median nTPM: 46.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 96.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 82.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 82.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 78.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 78.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 78.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 77.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 75.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 67.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 66.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 65.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.9
FF:10164-103B2 76 years, female 44.9
Globus pallidus
Scaled Tags Per Million: 35.3
FF:10161-103A8 76 years, female 44.6
FF:10175-103C4 60 years, female 26.0
Nucleus accumbens
Scaled Tags Per Million: 36.6
FF:10037-101F1 23-56 years, mixed 36.6
Putamen
Scaled Tags Per Million: 34.8
FF:10176-103C5 60 years, female 34.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 51.2
Pig sample Sample description nTPM
Caudate
nTPM: 43.5
Samples: 4

Max nTPM: 52.9
Min nTPM: 37.0
Sample A Female 37.7
Sample B Female 46.5
Sample C Male 52.9
Sample D Male 37.0
Putamen
nTPM: 51.2
Samples: 4

Max nTPM: 61.1
Min nTPM: 41.6
Sample A Female 49.9
Sample B Female 41.6
Sample C Male 61.1
Sample D Male 52.0
Septum
nTPM: 38.7
Samples: 4

Max nTPM: 42.7
Min nTPM: 35.2
Sample A Female 42.7
Sample B Female 38.1
Sample C Male 38.8
Sample D Male 35.2
Ventral pallidum
nTPM: 43.0
Samples: 4

Max nTPM: 49.1
Min nTPM: 36.5
Sample A Female 36.5
Sample B Female 44.7
Sample C Male 49.1
Sample D Male 41.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.3
Samples: 4

Max nTPM: 54.1
Min nTPM: 47.5
Sample A Male 51.4
Sample B Male 48.1
Sample C Female 54.1
Sample D Female 47.5
Septum
nTPM: 36.9
Samples: 4

Max nTPM: 38.7
Min nTPM: 34.2
Sample A Male 37.7
Sample B Male 34.2
Sample C Female 38.7
Sample D Female 36.8
Ventral forebrain
nTPM: 49.4
Samples: 4

Max nTPM: 54.7
Min nTPM: 46.0
Sample A Male 46.2
Sample B Male 46.0
Sample C Female 50.7
Sample D Female 54.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69080513 Antisense, RP_050324_02_C02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69080513 Antisense, RP_050324_02_C02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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