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NINJ1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.2 nTPM
HPA:53.2 nTPM
GTEx:57.8 nTPM
FANTOM5:46.5 Scaled Tags Per Million
Pig:5.4 nTPM
Mouse:5.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.5
2586 Male, age 75, left hemisphere 58.2
2828 Female, age 72, unknown 55.1
1827 Male, age 72, unknown 49.1
2666 Male, age 74, left hemisphere 48.9
1833 Male, age 53, unknown 48.4
1870 Female, age 42, unknown 48.2
1830 Male, age 51, unknown 48.0
2411 Female, age 72, unknown 47.7
2019 Male, age 18, unknown 47.2
2219 Male, age 76, both hemispheres 44.2
Dorsal raphe nucleus
nTPM: 52.6
2298 Female, age 72, unknown 56.4
2047 Male, age 72, unknown 53.9
1828 Male, age 53, unknown 53.2
2016 Female, age 72, unknown 51.0
2750 Male, age 76, both hemispheres 48.6
Inferior colliculus
nTPM: 53.2
2849 Male, age 72, unknown 56.4
1848 Female, age 42, unknown 54.5
2097 Female, age 72, unknown 51.1
1890 Male, age 53, unknown 50.8
Median raphe nucleus
nTPM: 47.9
2220 Male, age 76, midline 47.9
Pedunculopontine tegmental nucleus
nTPM: 49.4
2338 Male, age 61, both hemispheres 53.4
2334 Male, age 80, both hemispheres 49.4
1921 Female, age 85, both hemispheres 45.6
Periaquaductal grey, anterior
nTPM: 53.2
2502 Female, age 75, unknown 53.9
1795 Male, age 51, unknown 53.5
1947 Male, age 18, unknown 52.4
Periaquaductal grey, dorsal
nTPM: 52.4
1840 Male, age 53, unknown 55.7
2464 Female, age 72, unknown 53.0
1831 Male, age 72, unknown 50.5
2850 Male, age 76, both hemispheres 50.5
Periaquaductal grey, lateral
nTPM: 51.8
2272 Male, age 74, both hemispheres 52.9
2053 Male, age 18, unknown 52.3
2140 Male, age 76, both hemispheres 50.2
Pretectal area
nTPM: 49.8
1817 Female, age 42, unknown 52.2
2273 Male, age 74, both hemispheres 52.1
2224 Female, age 72, unknown 51.8
2825 Male, age 18, unknown 51.0
2667 Female, age 75, unknown 50.3
1944 Female, age 72, unknown 49.5
1815 Male, age 53, unknown 49.2
2007 Male, age 72, unknown 48.5
2316 Male, age 76, right hemisphere 48.5
2407 Male, age 75, both hemispheres 48.5
1816 Male, age 51, unknown 46.5
Red nucleus
nTPM: 48.8
2584 Male, age 75, left hemisphere 52.7
2503 Female, age 72, unknown 51.1
2725 Female, age 75, unknown 50.8
2769 Male, age 72, unknown 50.7
2227 Male, age 72, unknown 49.1
2823 Male, age 76, right hemisphere 49.1
1904 Male, age 53, unknown 48.9
1865 Male, age 51, unknown 47.9
1954 Female, age 42, unknown 47.9
2785 Male, age 18, unknown 47.9
1821 Female, age 72, unknown 45.3
2588 Male, age 74, left hemisphere 44.5
Substantia nigra
nTPM: 49.9
2665 Male, age 74, both hemispheres 56.2
2583 Male, age 75, right hemisphere 55.5
2699 Male, age 18, unknown 54.7
1851 Male, age 51, unknown 49.9
1916 Female, age 42, unknown 49.8
2590 Female, age 75, unknown 49.6
1889 Female, age 72, unknown 47.9
2409 Female, age 72, unknown 46.1
1941 Male, age 53, unknown 44.8
2241 Male, age 72, unknown 44.7
Superior colliculus
nTPM: 49.9
2664 Male, age 75, both hemispheres 54.1
1796 Male, age 53, unknown 53.3
1839 Male, age 51, unknown 52.4
1995 Male, age 72, unknown 52.1
2087 Female, age 72, unknown 50.1
2587 Male, age 74, left hemisphere 49.6
1913 Female, age 42, unknown 47.1
2261 Male, age 18, unknown 47.1
2668 Female, age 75, unknown 46.7
1895 Male, age 76, right hemisphere 46.0
Ventral tegmental area
nTPM: 49.8
1915 Female, age 42, unknown 52.3
1942 Male, age 51, unknown 52.3
2021 Male, age 53, unknown 51.5
2410 Female, age 72, unknown 49.7
2218 Male, age 76, both hemispheres 47.7
2223 Female, age 72, unknown 45.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.8
Samples: 139

Max nTPM: 168.0
Min nTPM: 20.9
Std nTPM: 22.3
Median nTPM: 53.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 168.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 124.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 122.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 119.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 111.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 100.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 96.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 94.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 92.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 90.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 89.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.5
FF:10158-103A5 76 years, female 46.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.4
Pig sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.8
Sample A Female 5.4
Sample B Female 5.4
Sample C Male 3.8
Sample D Male 5.2
Periaqueductal gray
nTPM: 5.4
Samples: 3

Max nTPM: 5.8
Min nTPM: 4.9
Sample B Female 5.4
Sample C Male 4.9
Sample D Male 5.8
Substantia nigra
nTPM: 5.5
Samples: 4

Max nTPM: 7.2
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 6.2
Sample C Male 4.8
Sample D Male 7.2
Superior colliculi
nTPM: 4.6
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 5.2
Sample C Male 4.2
Sample D Male 4.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 10.6
Min nTPM: 1.2
Sample A Male 10.6
Sample B Male 5.9
Sample C Female 1.2
Sample D Female 2.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69782264 Antisense, RP_050505_02_F05, Mouse strain C57BL/6J (56 days, male) 0.1
70919424 Antisense, RP_050713_01_C09, Mouse strain C57BL/6J (56 days, male) 0.0
71670490 Antisense, RP_050505_02_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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