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PEX11B
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:35.8 nTPM
HPA:35.8 nTPM
GTEx:40.8 nTPM
FANTOM5:42.4 Scaled Tags Per Million
Mouse:59.8 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA050104
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.6
2288 Male, age 75, left hemisphere 35.7
2846 Female, age 79, unknown 33.0
1857 Female, age 85, left hemisphere 32.6
2481 Female, age 94, left hemisphere 32.4
2290 Female, age 72, unknown 32.1
1781 Male, age 74, unknown 31.8
2289 Male, age 61, right hemisphere 31.7
1854 Male, age 80, left hemisphere 31.6
Claustrum
nTPM: 32.3
2392 Female, age 94, both hemispheres 34.0
2198 Male, age 80, both hemispheres 33.7
2568 Male, age 61, both hemispheres 33.4
2491 Male, age 75, both hemispheres 33.3
1956 Male, age 74, unknown 32.7
2284 Female, age 91, both hemispheres 32.5
2196 Female, age 79, unknown 30.5
2292 Female, age 85, both hemispheres 30.2
2645 Female, age 72, unknown 30.0
Globus pallidus, externus
nTPM: 30.1
2395 Male, age 75, both hemispheres 32.7
2772 Female, age 79, unknown 32.6
1996 Male, age 80, right hemisphere 30.4
2646 Male, age 61, right hemisphere 27.6
2567 Female, age 72, unknown 27.3
Globus pallidus, internus
nTPM: 30.5
2287 Male, age 75, right hemisphere 34.1
1818 Male, age 74, unknown 31.7
2483 Female, age 94, right hemisphere 30.7
2778 Female, age 91, both hemispheres 30.5
2037 Male, age 80, right hemisphere 29.5
2566 Female, age 72, unknown 28.7
2111 Female, age 85, right hemisphere 28.5
Nucleus accumbens
nTPM: 33.1
1856 Female, age 91, right hemisphere 36.9
2824 Male, age 61, right hemisphere 35.4
2286 Male, age 75, left hemisphere 35.2
1783 Male, age 74, unknown 33.1
1806 Female, age 85, left hemisphere 32.3
2698 Female, age 72, unknown 31.7
2391 Female, age 94, left hemisphere 30.6
2732 Male, age 80, right hemisphere 29.7
Nucleus basalis of Meynert
nTPM: 30.2
2393 Male, age 80, right hemisphere 31.4
2484 Female, age 94, left hemisphere 31.3
2821 Male, age 75, both hemispheres 31.1
2569 Male, age 61, both hemispheres 26.8
Nucleus of the diagonal band
nTPM: 35.8
1812 Female, age 91, both hemispheres 38.1
2775 Male, age 80, right hemisphere 37.7
2029 Male, age 61, right hemisphere 35.8
2195 Female, age 85, both hemispheres 34.7
1979 Male, age 74, unknown 32.4
Olfactory tubercle
nTPM: 35.5
1998 Female, age 91, both hemispheres 37.3
1846 Male, age 80, right hemisphere 36.4
2487 Female, age 94, left hemisphere 35.6
2856 Male, age 75, right hemisphere 32.7
Putamen
nTPM: 31.6
1937 Female, age 91, right hemisphere 34.7
1838 Male, age 80, right hemisphere 33.7
2466 Female, age 79, unknown 33.4
1829 Male, age 74, unknown 31.7
2482 Female, age 94, left hemisphere 31.0
2647 Male, age 75, left hemisphere 29.9
2489 Female, age 72, unknown 26.9
Septal nuclei
nTPM: 33.9
2031 Female, age 72, unknown 38.0
1960 Male, age 74, unknown 37.5
2629 Female, age 94, right hemisphere 35.5
2009 Female, age 91, both hemispheres 35.3
2059 Female, age 85, both hemispheres 32.1
2394 Male, age 61, left hemisphere 29.7
2199 Male, age 80, right hemisphere 29.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.7
Samples: 246

Max nTPM: 62.3
Min nTPM: 18.3
Std nTPM: 8.9
Median nTPM: 38.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 62.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 61.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 60.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 59.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 58.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 57.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 56.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 56.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 54.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 53.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 53.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.8
Samples: 246

Max nTPM: 66.1
Min nTPM: 18.8
Std nTPM: 9.8
Median nTPM: 41.2
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 66.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 64.6
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 62.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 62.2
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 61.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 59.4
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 58.7
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 57.9
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 57.7
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 57.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 57.1
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Brain - Putamen (basal ganglia)
Average nTPM: 38.5
Samples: 205

Max nTPM: 66.3
Min nTPM: 19.8
Std nTPM: 9.9
Median nTPM: 37.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 66.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 66.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 65.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 63.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 63.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 63.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 62.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 62.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 59.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 55.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 54.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.1
FF:10164-103B2 76 years, female 35.1
Globus pallidus
Scaled Tags Per Million: 27.4
FF:10175-103C4 60 years, female 30.7
FF:10161-103A8 76 years, female 24.0
Nucleus accumbens
Scaled Tags Per Million: 41.6
FF:10037-101F1 23-56 years, mixed 41.6
Putamen
Scaled Tags Per Million: 42.4
FF:10176-103C5 60 years, female 42.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 46.4
Samples: 4

Max nTPM: 49.9
Min nTPM: 42.0
Sample A Male 49.9
Sample B Male 42.0
Sample C Female 49.6
Sample D Female 44.0
Septum
nTPM: 59.9
Samples: 4

Max nTPM: 65.7
Min nTPM: 54.2
Sample A Male 60.7
Sample B Male 65.7
Sample C Female 58.8
Sample D Female 54.2
Ventral forebrain
nTPM: 53.4
Samples: 4

Max nTPM: 58.0
Min nTPM: 51.0
Sample A Male 51.4
Sample B Male 53.2
Sample C Female 58.0
Sample D Female 51.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
70439069 Antisense, RP_050614_03_A08, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.4
70439069 Antisense, RP_050614_03_A08, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.