ABOUTMENU
HELP
NEWS
CC2D1A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.4 nTPM
HPA:11.4 nTPM
GTEx:26.6 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:13.9 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.1
2586 Male, age 75, left hemisphere 13.5
2666 Male, age 74, left hemisphere 13.4
2219 Male, age 76, both hemispheres 11.5
1827 Male, age 72, unknown 11.4
2828 Female, age 72, unknown 11.3
1833 Male, age 53, unknown 11.0
1870 Female, age 42, unknown 10.1
2411 Female, age 72, unknown 10.1
1830 Male, age 51, unknown 9.9
2019 Male, age 18, unknown 9.0
Dorsal raphe nucleus
nTPM: 10.8
2047 Male, age 72, unknown 11.6
2750 Male, age 76, both hemispheres 11.4
1828 Male, age 53, unknown 11.1
2298 Female, age 72, unknown 10.3
2016 Female, age 72, unknown 9.9
Inferior colliculus
nTPM: 10.9
2849 Male, age 72, unknown 12.0
1890 Male, age 53, unknown 11.1
1848 Female, age 42, unknown 10.8
2097 Female, age 72, unknown 9.8
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Pedunculopontine tegmental nucleus
nTPM: 10.9
1921 Female, age 85, both hemispheres 11.1
2338 Male, age 61, both hemispheres 10.9
2334 Male, age 80, both hemispheres 10.7
Periaquaductal grey, anterior
nTPM: 11.1
1795 Male, age 51, unknown 11.7
1947 Male, age 18, unknown 11.4
2502 Female, age 75, unknown 10.2
Periaquaductal grey, dorsal
nTPM: 10.8
1840 Male, age 53, unknown 11.6
2850 Male, age 76, both hemispheres 11.0
2464 Female, age 72, unknown 10.8
1831 Male, age 72, unknown 10.1
Periaquaductal grey, lateral
nTPM: 10.2
2140 Male, age 76, both hemispheres 10.8
2053 Male, age 18, unknown 10.2
2272 Male, age 74, both hemispheres 9.8
Pretectal area
nTPM: 10.5
2825 Male, age 18, unknown 11.9
2667 Female, age 75, unknown 11.2
2224 Female, age 72, unknown 11.1
1816 Male, age 51, unknown 10.9
1944 Female, age 72, unknown 10.8
2407 Male, age 75, both hemispheres 10.4
2007 Male, age 72, unknown 10.3
1817 Female, age 42, unknown 10.1
1815 Male, age 53, unknown 9.9
2316 Male, age 76, right hemisphere 9.5
2273 Male, age 74, both hemispheres 9.0
Red nucleus
nTPM: 10.6
2588 Male, age 74, left hemisphere 11.9
2823 Male, age 76, right hemisphere 11.4
2725 Female, age 75, unknown 11.1
2227 Male, age 72, unknown 11.0
2584 Male, age 75, left hemisphere 10.9
2769 Male, age 72, unknown 10.9
1865 Male, age 51, unknown 10.6
1954 Female, age 42, unknown 10.3
1904 Male, age 53, unknown 10.1
2503 Female, age 72, unknown 10.0
1821 Female, age 72, unknown 9.6
2785 Male, age 18, unknown 9.5
Substantia nigra
nTPM: 11.4
2699 Male, age 18, unknown 13.5
1916 Female, age 42, unknown 12.6
2665 Male, age 74, both hemispheres 11.7
1851 Male, age 51, unknown 11.6
1889 Female, age 72, unknown 11.3
2583 Male, age 75, right hemisphere 11.1
2241 Male, age 72, unknown 11.0
1941 Male, age 53, unknown 10.9
2590 Female, age 75, unknown 10.1
2409 Female, age 72, unknown 9.7
Superior colliculus
nTPM: 10.7
2668 Female, age 75, unknown 11.5
1796 Male, age 53, unknown 11.4
1895 Male, age 76, right hemisphere 11.4
2664 Male, age 75, both hemispheres 11.4
1839 Male, age 51, unknown 10.8
2261 Male, age 18, unknown 10.7
2587 Male, age 74, left hemisphere 10.7
2087 Female, age 72, unknown 10.6
1913 Female, age 42, unknown 9.5
1995 Male, age 72, unknown 9.2
Ventral tegmental area
nTPM: 10.9
1915 Female, age 42, unknown 12.7
2218 Male, age 76, both hemispheres 11.3
1942 Male, age 51, unknown 10.6
2021 Male, age 53, unknown 10.5
2410 Female, age 72, unknown 10.5
2223 Female, age 72, unknown 10.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.6
Samples: 139

Max nTPM: 50.1
Min nTPM: 15.1
Std nTPM: 6.3
Median nTPM: 26.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 50.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 43.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 42.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 39.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 39.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 38.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 38.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 37.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 37.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 37.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 35.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.9
Pig sample Sample description nTPM
Midbrain
nTPM: 11.6
Samples: 4

Max nTPM: 13.7
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 11.8
Sample C Male 13.7
Sample D Male 13.1
Periaqueductal gray
nTPM: 12.9
Samples: 3

Max nTPM: 14.7
Min nTPM: 11.9
Sample B Female 11.9
Sample C Male 14.7
Sample D Male 12.2
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 17.2
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 13.0
Sample C Male 17.2
Sample D Male 12.2
Superior colliculi
nTPM: 11.3
Samples: 4

Max nTPM: 14.3
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 12.2
Sample C Male 11.1
Sample D Male 14.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.5
Sample A Male 15.3
Sample B Male 12.9
Sample C Female 12.5
Sample D Female 14.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
70430852 Antisense, RP_050614_02_B12, Mouse strain C57BL/6J (56 days, male) 3.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.