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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.7 nTPM
HPA:81.7 nTPM
GTEx:117.5 nTPM
FANTOM5:69.8 Scaled Tags Per Million
Pig:17.6 nTPM
Mouse:18.8 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.4
1870 Female, age 42, unknown 80.9
2411 Female, age 72, unknown 80.1
1827 Male, age 72, unknown 79.1
2019 Male, age 18, unknown 79.1
1830 Male, age 51, unknown 77.2
2828 Female, age 72, unknown 77.0
1833 Male, age 53, unknown 76.9
2219 Male, age 76, both hemispheres 76.1
2586 Male, age 75, left hemisphere 74.2
2666 Male, age 74, left hemisphere 73.7
Dorsal raphe nucleus
nTPM: 80.4
2298 Female, age 72, unknown 85.6
2047 Male, age 72, unknown 80.0
1828 Male, age 53, unknown 79.7
2750 Male, age 76, both hemispheres 78.9
2016 Female, age 72, unknown 77.9
Inferior colliculus
nTPM: 78.5
2097 Female, age 72, unknown 83.2
1890 Male, age 53, unknown 79.2
1848 Female, age 42, unknown 76.2
2849 Male, age 72, unknown 75.5
Median raphe nucleus
nTPM: 81.7
2220 Male, age 76, midline 81.7
Pedunculopontine tegmental nucleus
nTPM: 81.7
2338 Male, age 61, both hemispheres 82.8
2334 Male, age 80, both hemispheres 82.2
1921 Female, age 85, both hemispheres 80.2
Periaquaductal grey, anterior
nTPM: 78.3
1947 Male, age 18, unknown 78.5
1795 Male, age 51, unknown 78.3
2502 Female, age 75, unknown 78.0
Periaquaductal grey, dorsal
nTPM: 78.5
2850 Male, age 76, both hemispheres 79.9
1831 Male, age 72, unknown 78.8
2464 Female, age 72, unknown 78.0
1840 Male, age 53, unknown 77.3
Periaquaductal grey, lateral
nTPM: 77.4
2053 Male, age 18, unknown 77.8
2272 Male, age 74, both hemispheres 77.6
2140 Male, age 76, both hemispheres 76.7
Pretectal area
nTPM: 80.6
2224 Female, age 72, unknown 83.3
1817 Female, age 42, unknown 82.8
2007 Male, age 72, unknown 82.6
2667 Female, age 75, unknown 82.3
1816 Male, age 51, unknown 81.0
1944 Female, age 72, unknown 80.3
2273 Male, age 74, both hemispheres 80.3
1815 Male, age 53, unknown 80.2
2316 Male, age 76, right hemisphere 78.5
2825 Male, age 18, unknown 78.2
2407 Male, age 75, both hemispheres 77.2
Red nucleus
nTPM: 78.5
1821 Female, age 72, unknown 82.1
1954 Female, age 42, unknown 81.8
1865 Male, age 51, unknown 80.7
2823 Male, age 76, right hemisphere 79.9
1904 Male, age 53, unknown 79.7
2503 Female, age 72, unknown 79.6
2785 Male, age 18, unknown 78.9
2725 Female, age 75, unknown 78.1
2769 Male, age 72, unknown 77.3
2227 Male, age 72, unknown 76.1
2584 Male, age 75, left hemisphere 75.0
2588 Male, age 74, left hemisphere 73.3
Substantia nigra
nTPM: 79.4
1916 Female, age 42, unknown 82.5
2241 Male, age 72, unknown 81.6
1889 Female, age 72, unknown 81.2
2665 Male, age 74, both hemispheres 81.2
1851 Male, age 51, unknown 80.2
2699 Male, age 18, unknown 79.3
1941 Male, age 53, unknown 79.0
2590 Female, age 75, unknown 78.2
2409 Female, age 72, unknown 76.4
2583 Male, age 75, right hemisphere 74.6
Superior colliculus
nTPM: 77.9
1895 Male, age 76, right hemisphere 79.8
1913 Female, age 42, unknown 79.1
1796 Male, age 53, unknown 78.9
2587 Male, age 74, left hemisphere 78.7
1995 Male, age 72, unknown 78.3
2087 Female, age 72, unknown 77.8
2668 Female, age 75, unknown 77.8
2261 Male, age 18, unknown 76.7
1839 Male, age 51, unknown 76.3
2664 Male, age 75, both hemispheres 76.0
Ventral tegmental area
nTPM: 79.0
1915 Female, age 42, unknown 82.1
2410 Female, age 72, unknown 79.3
2218 Male, age 76, both hemispheres 79.2
2021 Male, age 53, unknown 78.0
2223 Female, age 72, unknown 78.0
1942 Male, age 51, unknown 77.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 117.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.5
Samples: 139

Max nTPM: 219.1
Min nTPM: 71.3
Std nTPM: 27.7
Median nTPM: 111.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 219.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 207.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 205.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 202.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 192.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 188.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 184.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 178.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 173.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 163.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 161.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.8
FF:10158-103A5 76 years, female 69.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.6
Pig sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 23.1
Min nTPM: 14.7
Sample A Female 23.1
Sample B Female 17.5
Sample C Male 15.0
Sample D Male 14.7
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 14.4
Min nTPM: 13.1
Sample B Female 14.4
Sample C Male 13.9
Sample D Male 13.1
Substantia nigra
nTPM: 15.9
Samples: 4

Max nTPM: 22.4
Min nTPM: 12.8
Sample A Female 22.4
Sample B Female 14.2
Sample C Male 14.1
Sample D Male 12.8
Superior colliculi
nTPM: 16.3
Samples: 4

Max nTPM: 20.5
Min nTPM: 14.0
Sample A Female 20.5
Sample B Female 14.8
Sample C Male 15.9
Sample D Male 14.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 22.7
Min nTPM: 15.7
Sample A Male 19.6
Sample B Male 22.7
Sample C Female 15.7
Sample D Female 17.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
76098393 Antisense, RP_060626_01_G06, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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