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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA054148
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA059929
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Medium
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 853.3
Min nTPM: 131.8
Std nTPM: 125.8
Median nTPM: 0.0
218_1
71 years, female
853.3
322_1
76 years, male
701.2
447_1
81 years, male
617.2
350_1
84 years, female
592.3
316_1
62 years, male
589.7
237_1
82 years, male
586.5
319_1
81 years, male
560.1
379_1
60 years, male
553.9
321_1
62 years, female
553.1
377_1
82 years, female
550.5
6_1
73 years, female
546.3
335_1
73 years, female
546.0
376_1
75 years, female
533.2
163_1
78 years, male
530.0
354_1
81 years, female
518.7
352_1
62 years, male
516.2
452_1
88 years, female
511.5
172_1
72 years, female
504.8
349_1
83 years, male
500.6
2_1
77 years, female
493.3
375_1
74 years, female
491.8
295_1
61 years, female
487.4
286_1
68 years, female
474.9
348_1
84 years, male
470.8
293_1
68 years, female
469.4
405_1
91 years, male
468.7
480_1
63 years, male
467.4
503_1
68 years, male
464.1
307_1
66 years, female
458.4
243_1
75 years, male
456.0
318_1
68 years, male
453.2
355_1
70 years, female
444.9
351_1
91 years, male
443.2
189_1
76 years, male
434.7
425_1
59 years, female
434.2
386_1
76 years, male
432.6
404_1
82 years, female
431.3
394_1
75 years, female
429.8
153_1
70 years, female
429.4
356_1
87 years, female
428.0
229_1
69 years, female
427.9
495_1
57 years, female
425.8
389_1
86 years, female
422.5
406_1
79 years, male
416.6
353_1
82 years, female
401.9
320_1
89 years, female
399.8
292_1
71 years, male
386.3
251_1
78 years, male
385.6
173_1
67 years, male
382.9
142_1
61 years, female
382.5
384_1
83 years, male
379.2
265_1
87 years, male
378.7
145_1
84 years, male
374.5
499_1
55 years, female
371.1
126_1
63 years, male
370.9
526_1
61 years, male
368.7
43_1
64 years, female
367.6
266_1
85 years, male
367.0
177_1
74 years, male
366.2
246_1
77 years, male
365.2
264_1
73 years, female
357.5
291_1
76 years, male
355.8
217_1
76 years, male
352.2
518_1
75 years, female
350.2
4_1
88 years, female
348.8
517_1
88 years, male
344.9
324_1
76 years, male
341.7
35_1
74 years, female
338.5
396_1
62 years, male
331.3
468_1
89 years, male
329.8
317_1
60 years, male
329.5
115_1
83 years, male
327.6
347_1
72 years, male
324.3
506_1
65 years, male
314.9
162_1
79 years, female
314.2
81_1
67 years, male
306.3
137_1
83 years, male
304.8
9_1
66 years, female
304.5
466_1
57 years, female
298.6
311_1
78 years, male
295.5
254_1
77 years, female
289.1
17_1
71 years, male
280.5
18_1
88 years, male
278.1
288_1
66 years, female
277.8
313_1
79 years, female
277.7
117_1
61 years, male
275.2
314_1
67 years, male
271.9
308_1
70 years, female
266.9
32_1
67 years, male
263.8
41_1
94 years, female
251.3
42_1
85 years, male
247.9
120_1
70 years, female
246.1
109_1
81 years, female
243.2
139_1
64 years, female
239.5
415_1
77 years, female
229.9
99_1
64 years, male
226.3
315_1
62 years, female
202.2
414_1
84 years, female
195.8
149_1
88 years, male
192.3
119_1
70 years, female
175.7
501_1
88 years, male
171.6
490_1
67 years, female
164.9
89_1
63 years, male
142.7
413_1
59 years, female
137.9
491_1
89 years, female
131.8
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.