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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.1 nTPM
HPA:74.1 nTPM
GTEx:107.0 nTPM
FANTOM5:102.2 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:23.7 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.8
2666 Male, age 74, left hemisphere 92.1
2586 Male, age 75, left hemisphere 87.2
2828 Female, age 72, unknown 71.5
1827 Male, age 72, unknown 70.2
2019 Male, age 18, unknown 65.4
2411 Female, age 72, unknown 63.1
2219 Male, age 76, both hemispheres 62.6
1870 Female, age 42, unknown 60.1
1833 Male, age 53, unknown 58.8
1830 Male, age 51, unknown 57.2
Dorsal raphe nucleus
nTPM: 56.3
2750 Male, age 76, both hemispheres 62.9
2047 Male, age 72, unknown 58.0
2298 Female, age 72, unknown 57.1
1828 Male, age 53, unknown 55.3
2016 Female, age 72, unknown 48.4
Inferior colliculus
nTPM: 64.4
2849 Male, age 72, unknown 71.2
2097 Female, age 72, unknown 66.5
1848 Female, age 42, unknown 60.8
1890 Male, age 53, unknown 59.0
Median raphe nucleus
nTPM: 63.5
2220 Male, age 76, midline 63.5
Pedunculopontine tegmental nucleus
nTPM: 57.9
1921 Female, age 85, both hemispheres 65.4
2334 Male, age 80, both hemispheres 63.2
2338 Male, age 61, both hemispheres 45.0
Periaquaductal grey, anterior
nTPM: 74.1
2502 Female, age 75, unknown 77.2
1795 Male, age 51, unknown 75.5
1947 Male, age 18, unknown 69.6
Periaquaductal grey, dorsal
nTPM: 56.5
1840 Male, age 53, unknown 65.4
2464 Female, age 72, unknown 61.2
1831 Male, age 72, unknown 51.9
2850 Male, age 76, both hemispheres 47.6
Periaquaductal grey, lateral
nTPM: 49.4
2053 Male, age 18, unknown 54.0
2140 Male, age 76, both hemispheres 49.9
2272 Male, age 74, both hemispheres 44.3
Pretectal area
nTPM: 69.0
1816 Male, age 51, unknown 94.3
2007 Male, age 72, unknown 86.2
1817 Female, age 42, unknown 84.9
1944 Female, age 72, unknown 81.7
1815 Male, age 53, unknown 69.9
2825 Male, age 18, unknown 64.6
2667 Female, age 75, unknown 62.9
2224 Female, age 72, unknown 60.4
2316 Male, age 76, right hemisphere 58.0
2407 Male, age 75, both hemispheres 56.8
2273 Male, age 74, both hemispheres 39.4
Red nucleus
nTPM: 57.4
2584 Male, age 75, left hemisphere 80.1
2785 Male, age 18, unknown 71.4
2588 Male, age 74, left hemisphere 69.7
2227 Male, age 72, unknown 59.4
2769 Male, age 72, unknown 58.6
2503 Female, age 72, unknown 55.4
2823 Male, age 76, right hemisphere 52.2
1954 Female, age 42, unknown 51.9
1904 Male, age 53, unknown 48.2
2725 Female, age 75, unknown 48.0
1821 Female, age 72, unknown 46.9
1865 Male, age 51, unknown 46.9
Substantia nigra
nTPM: 61.7
2665 Male, age 74, both hemispheres 78.2
1889 Female, age 72, unknown 74.8
1941 Male, age 53, unknown 73.3
1916 Female, age 42, unknown 68.1
2583 Male, age 75, right hemisphere 64.3
1851 Male, age 51, unknown 63.2
2590 Female, age 75, unknown 51.2
2699 Male, age 18, unknown 50.6
2241 Male, age 72, unknown 48.5
2409 Female, age 72, unknown 44.6
Superior colliculus
nTPM: 68.8
2668 Female, age 75, unknown 97.2
2087 Female, age 72, unknown 76.2
2664 Male, age 75, both hemispheres 73.9
1796 Male, age 53, unknown 71.1
2261 Male, age 18, unknown 67.3
1839 Male, age 51, unknown 65.7
1895 Male, age 76, right hemisphere 63.8
2587 Male, age 74, left hemisphere 59.0
1913 Female, age 42, unknown 58.5
1995 Male, age 72, unknown 55.3
Ventral tegmental area
nTPM: 60.5
2223 Female, age 72, unknown 63.8
1915 Female, age 42, unknown 61.9
1942 Male, age 51, unknown 60.0
2218 Male, age 76, both hemispheres 59.8
2410 Female, age 72, unknown 59.0
2021 Male, age 53, unknown 58.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 107.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.0
Samples: 139

Max nTPM: 218.7
Min nTPM: 49.8
Std nTPM: 30.9
Median nTPM: 105.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 218.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 171.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 169.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 167.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 165.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 162.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 161.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 157.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 157.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 155.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 149.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.2
FF:10158-103A5 76 years, female 102.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.3
Pig sample Sample description nTPM
Midbrain
nTPM: 28.8
Samples: 4

Max nTPM: 37.8
Min nTPM: 20.1
Sample A Female 20.1
Sample B Female 22.8
Sample C Male 37.8
Sample D Male 34.4
Periaqueductal gray
nTPM: 22.1
Samples: 3

Max nTPM: 25.4
Min nTPM: 19.1
Sample B Female 21.7
Sample C Male 25.4
Sample D Male 19.1
Substantia nigra
nTPM: 22.8
Samples: 4

Max nTPM: 28.3
Min nTPM: 17.0
Sample A Female 27.0
Sample B Female 18.8
Sample C Male 28.3
Sample D Male 17.0
Superior colliculi
nTPM: 30.4
Samples: 4

Max nTPM: 36.4
Min nTPM: 22.6
Sample A Female 30.3
Sample B Female 22.6
Sample C Male 36.4
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 28.7
Min nTPM: 20.6
Sample A Male 28.7
Sample B Male 22.1
Sample C Female 20.6
Sample D Female 23.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
2089 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 3.1
2090 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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