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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:854.3 nTPM
HPA:854.3 nTPM
GTEx:609.7 nTPM
FANTOM5:1272.5 Scaled Tags Per Million
Pig:504.1 nTPM
Mouse:630.3 nTPM
Allen mouse:27.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 854.3
Sample id Sample description nTPM
Hippocampus
nTPM: 854.3
1855 Male, age 76, left hemisphere 949.3
1898 Male, age 80, left hemisphere 885.2
2148 Female, age 91, left hemisphere 841.6
2529 Female, age 94, left hemisphere 838.2
2621 Female, age 67, right hemisphere 815.5
1911 Female, age 85, right hemisphere 796.1
Dentate gyrus
nTPM: 788.4
2010 Male, age 76, both hemispheres 862.2
2246 Female, age 85, both hemispheres 835.3
2528 Male, age 74, both hemispheres 812.0
2530 Female, age 94, left hemisphere 785.9
1927 Female, age 91, both hemispheres 737.9
2531 Female, age 67, both hemispheres 696.9
Entorhinal gyrus
nTPM: 821.1
2117 Female, age 91, right hemisphere 959.7
2686 Male, age 75, right hemisphere 830.0
1787 Male, age 76, left hemisphere 825.9
1938 Female, age 85, left hemisphere 813.2
2613 Female, age 94, left hemisphere 750.5
2764 Male, age 80, right hemisphere 747.6
Hippocampus, CA1
nTPM: 817.9
2749 Male, age 80, left hemisphere 888.6
2527 Male, age 74, both hemispheres 855.5
1873 Female, age 85, both hemispheres 843.0
2045 Male, age 76, both hemispheres 752.9
2082 Female, age 91, right hemisphere 749.3
Hippocampus, CA2
nTPM: 805.8
1892 Male, age 76, both hemispheres 881.0
2437 Female, age 94, left hemisphere 827.7
2249 Male, age 74, both hemispheres 807.5
1963 Male, age 80, left hemisphere 786.7
2113 Female, age 91, right hemisphere 774.0
1940 Female, age 85, left hemisphere 758.0
Hippocampus, CA3
nTPM: 789.5
1867 Male, age 76, both hemispheres 858.6
2137 Male, age 80, left hemisphere 828.9
2861 Female, age 67, both hemispheres 794.6
1891 Female, age 85, both hemispheres 772.3
2436 Male, age 74, both hemispheres 767.7
2620 Female, age 94, left hemisphere 714.9
Parahippocampal cortex
nTPM: 783.5
2250 Female, age 67, right hemisphere 916.1
1933 Female, age 85, both hemispheres 831.1
2692 Male, age 74, both hemispheres 820.0
2622 Female, age 67, right hemisphere 813.2
2693 Female, age 94, both hemispheres 783.5
2245 Female, age 91, both hemispheres 770.6
1850 Male, age 80, both hemispheres 743.0
1990 Female, age 91, right hemisphere 722.8
2018 Male, age 76, both hemispheres 722.8
2532 Female, age 72, left hemisphere 712.4
Perirhinal gyrus
nTPM: 789.5
1794 Male, age 80, right hemisphere 801.7
2848 Male, age 76, right hemisphere 790.0
2521 Female, age 94, right hemisphere 788.5
1841 Female, age 85, right hemisphere 784.1
1847 Female, age 91, left hemisphere 783.0
Subiculum
nTPM: 811.7
2729 Female, age 91, right hemisphere 897.4
2619 Male, age 74, both hemispheres 844.1
2438 Female, age 94, left hemisphere 798.1
2042 Male, age 76, both hemispheres 792.0
1901 Male, age 80, both hemispheres 773.9
1977 Female, age 85, both hemispheres 764.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 609.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 609.7
Samples: 197

Max nTPM: 1432.7
Min nTPM: 139.9
Std nTPM: 223.1
Median nTPM: 594.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1432.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 1208.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1208.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 1073.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1066.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1062.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1047.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1046.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 1027.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1014.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1013.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1272.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1272.5
FF:10169-103B7 60 years, female 1459.6
FF:10153-102I9 76 years, female 1085.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 504.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 466.6
Samples: 4

Max nTPM: 637.1
Min nTPM: 309.9
Sample A Female 637.1
Sample B Female 527.0
Sample C Male 392.3
Sample D Male 309.9
Entorhinal cortex
nTPM: 362.8
Samples: 4

Max nTPM: 417.5
Min nTPM: 288.3
Sample A Female 417.5
Sample B Female 363.9
Sample C Male 381.5
Sample D Male 288.3
Subiculum
nTPM: 335.5
Samples: 4

Max nTPM: 433.7
Min nTPM: 286.1
Sample A Female 433.7
Sample B Female 286.1
Sample C Male 320.0
Sample D Male 302.1
Ventral hippocampus
nTPM: 504.1
Samples: 4

Max nTPM: 590.9
Min nTPM: 265.3
Sample A Female 570.4
Sample B Female 265.3
Sample C Male 590.9
Sample D Male 589.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 630.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 538.9
Samples: 4

Max nTPM: 582.0
Min nTPM: 488.0
Sample A Male 488.0
Sample B Male 546.7
Sample C Female 538.9
Sample D Female 582.0
Hippocampal formation
nTPM: 630.3
Samples: 4

Max nTPM: 684.7
Min nTPM: 608.9
Sample A Male 615.8
Sample B Male 608.9
Sample C Female 684.7
Sample D Female 611.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 27.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 27.1
68196976 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 29.6
67936207 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 28.7
77414652 Antisense, RP_070205_01_H10, Mouse strain C57BL/6J (56 days, male) 24.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.