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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:960.3 nTPM
HPA:960.3 nTPM
GTEx:763.8 nTPM
FANTOM5:553.8 Scaled Tags Per Million
Pig:381.1 nTPM
Mouse:354.2 nTPM
Allen mouse:20.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 960.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 845.1
2586 Male, age 75, left hemisphere 1076.8
2828 Female, age 72, unknown 984.7
1827 Male, age 72, unknown 913.8
2666 Male, age 74, left hemisphere 873.0
1870 Female, age 42, unknown 855.6
2219 Male, age 76, both hemispheres 847.8
1833 Male, age 53, unknown 782.1
2411 Female, age 72, unknown 762.9
1830 Male, age 51, unknown 732.7
2019 Male, age 18, unknown 621.6
Dorsal raphe nucleus
nTPM: 883.6
2016 Female, age 72, unknown 966.5
2047 Male, age 72, unknown 964.2
2298 Female, age 72, unknown 902.7
1828 Male, age 53, unknown 850.8
2750 Male, age 76, both hemispheres 734.0
Inferior colliculus
nTPM: 944.1
2849 Male, age 72, unknown 993.1
1848 Female, age 42, unknown 960.6
1890 Male, age 53, unknown 924.0
2097 Female, age 72, unknown 898.7
Median raphe nucleus
nTPM: 766.0
2220 Male, age 76, midline 766.0
Pedunculopontine tegmental nucleus
nTPM: 749.5
1921 Female, age 85, both hemispheres 786.9
2334 Male, age 80, both hemispheres 734.7
2338 Male, age 61, both hemispheres 726.8
Periaquaductal grey, anterior
nTPM: 892.3
1795 Male, age 51, unknown 979.7
1947 Male, age 18, unknown 883.4
2502 Female, age 75, unknown 813.9
Periaquaductal grey, dorsal
nTPM: 960.3
1840 Male, age 53, unknown 1122.0
1831 Male, age 72, unknown 959.6
2850 Male, age 76, both hemispheres 906.0
2464 Female, age 72, unknown 853.5
Periaquaductal grey, lateral
nTPM: 938.0
2053 Male, age 18, unknown 1064.2
2140 Male, age 76, both hemispheres 890.0
2272 Male, age 74, both hemispheres 860.0
Pretectal area
nTPM: 828.1
2825 Male, age 18, unknown 1010.2
2224 Female, age 72, unknown 944.1
1944 Female, age 72, unknown 865.7
1816 Male, age 51, unknown 845.9
2667 Female, age 75, unknown 839.4
2273 Male, age 74, both hemispheres 801.7
1817 Female, age 42, unknown 794.2
1815 Male, age 53, unknown 784.2
2407 Male, age 75, both hemispheres 781.0
2316 Male, age 76, right hemisphere 756.4
2007 Male, age 72, unknown 686.6
Red nucleus
nTPM: 738.7
2725 Female, age 75, unknown 853.6
2503 Female, age 72, unknown 819.8
2769 Male, age 72, unknown 780.7
2227 Male, age 72, unknown 778.4
2588 Male, age 74, left hemisphere 745.0
1821 Female, age 72, unknown 744.2
2584 Male, age 75, left hemisphere 733.6
1954 Female, age 42, unknown 724.8
2823 Male, age 76, right hemisphere 701.6
1904 Male, age 53, unknown 685.0
1865 Male, age 51, unknown 669.3
2785 Male, age 18, unknown 628.2
Substantia nigra
nTPM: 848.8
2699 Male, age 18, unknown 1089.6
1916 Female, age 42, unknown 933.6
2665 Male, age 74, both hemispheres 881.3
1851 Male, age 51, unknown 867.4
2583 Male, age 75, right hemisphere 848.2
2590 Female, age 75, unknown 798.8
1889 Female, age 72, unknown 798.4
1941 Male, age 53, unknown 792.5
2241 Male, age 72, unknown 773.1
2409 Female, age 72, unknown 705.6
Superior colliculus
nTPM: 852.5
2664 Male, age 75, both hemispheres 1040.3
1796 Male, age 53, unknown 946.1
1839 Male, age 51, unknown 891.6
2261 Male, age 18, unknown 882.0
2087 Female, age 72, unknown 852.7
1913 Female, age 42, unknown 818.6
2668 Female, age 75, unknown 797.0
2587 Male, age 74, left hemisphere 795.4
1995 Male, age 72, unknown 769.4
1895 Male, age 76, right hemisphere 732.2
Ventral tegmental area
nTPM: 843.4
1915 Female, age 42, unknown 926.2
2021 Male, age 53, unknown 878.2
1942 Male, age 51, unknown 872.4
2218 Male, age 76, both hemispheres 819.0
2223 Female, age 72, unknown 785.5
2410 Female, age 72, unknown 779.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 763.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 763.8
Samples: 139

Max nTPM: 2091.0
Min nTPM: 99.9
Std nTPM: 361.9
Median nTPM: 739.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 2091.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1946.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1744.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1589.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1582.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1516.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1438.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1434.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1396.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1387.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1377.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 553.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 553.8
FF:10158-103A5 76 years, female 553.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 381.1
Pig sample Sample description nTPM
Midbrain
nTPM: 381.1
Samples: 4

Max nTPM: 524.8
Min nTPM: 214.4
Sample A Female 487.8
Sample B Female 214.4
Sample C Male 524.8
Sample D Male 297.4
Periaqueductal gray
nTPM: 269.1
Samples: 3

Max nTPM: 327.0
Min nTPM: 230.2
Sample B Female 230.2
Sample C Male 327.0
Sample D Male 250.0
Substantia nigra
nTPM: 313.1
Samples: 4

Max nTPM: 410.8
Min nTPM: 245.3
Sample A Female 410.8
Sample B Female 284.7
Sample C Male 311.5
Sample D Male 245.3
Superior colliculi
nTPM: 350.6
Samples: 4

Max nTPM: 435.1
Min nTPM: 301.4
Sample A Female 358.3
Sample B Female 307.5
Sample C Male 435.1
Sample D Male 301.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 354.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 354.2
Samples: 4

Max nTPM: 384.0
Min nTPM: 332.6
Sample A Male 384.0
Sample B Male 339.2
Sample C Female 332.6
Sample D Female 361.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.3
67936207 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 24.3
68196976 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 19.9
77414652 Antisense, RP_070205_01_H10, Mouse strain C57BL/6J (56 days, male) 16.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.