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CAB39
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:34.3 nTPM
HPA:34.3 nTPM
GTEx:32.7 nTPM
FANTOM5:76.7 Scaled Tags Per Million
Pig:49.5 nTPM
Mouse:112.7 nTPM
Allen mouse:17.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA076632Antibody CAB037112
Glial cells MediumLow
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Hippocampus
nTPM: 28.3
1898 Male, age 80, left hemisphere 35.7
1855 Male, age 76, left hemisphere 29.2
2621 Female, age 67, right hemisphere 27.9
2148 Female, age 91, left hemisphere 26.6
2529 Female, age 94, left hemisphere 26.2
1911 Female, age 85, right hemisphere 24.4
Dentate gyrus
nTPM: 28.2
1927 Female, age 91, both hemispheres 31.2
2010 Male, age 76, both hemispheres 30.5
2528 Male, age 74, both hemispheres 28.1
2246 Female, age 85, both hemispheres 27.4
2530 Female, age 94, left hemisphere 26.9
2531 Female, age 67, both hemispheres 24.8
Entorhinal gyrus
nTPM: 28.0
1938 Female, age 85, left hemisphere 31.9
2764 Male, age 80, right hemisphere 29.2
1787 Male, age 76, left hemisphere 29.0
2613 Female, age 94, left hemisphere 27.2
2117 Female, age 91, right hemisphere 26.4
2686 Male, age 75, right hemisphere 24.6
Hippocampus, CA1
nTPM: 32.2
2749 Male, age 80, left hemisphere 41.9
2045 Male, age 76, both hemispheres 34.6
1873 Female, age 85, both hemispheres 31.4
2527 Male, age 74, both hemispheres 29.0
2082 Female, age 91, right hemisphere 23.8
Hippocampus, CA2
nTPM: 28.8
1892 Male, age 76, both hemispheres 34.9
1963 Male, age 80, left hemisphere 30.8
2249 Male, age 74, both hemispheres 28.6
1940 Female, age 85, left hemisphere 26.6
2437 Female, age 94, left hemisphere 26.5
2113 Female, age 91, right hemisphere 25.1
Hippocampus, CA3
nTPM: 30.6
2137 Male, age 80, left hemisphere 38.1
1867 Male, age 76, both hemispheres 34.4
2620 Female, age 94, left hemisphere 31.4
2436 Male, age 74, both hemispheres 28.4
1891 Female, age 85, both hemispheres 28.0
2861 Female, age 67, both hemispheres 23.4
Parahippocampal cortex
nTPM: 28.2
1850 Male, age 80, both hemispheres 36.5
1990 Female, age 91, right hemisphere 30.7
1933 Female, age 85, both hemispheres 29.9
2532 Female, age 72, left hemisphere 29.9
2245 Female, age 91, both hemispheres 27.9
2018 Male, age 76, both hemispheres 27.3
2250 Female, age 67, right hemisphere 27.0
2693 Female, age 94, both hemispheres 26.4
2692 Male, age 74, both hemispheres 24.7
2622 Female, age 67, right hemisphere 21.9
Perirhinal gyrus
nTPM: 34.3
1847 Female, age 91, left hemisphere 38.1
1794 Male, age 80, right hemisphere 37.8
1841 Female, age 85, right hemisphere 34.9
2521 Female, age 94, right hemisphere 31.8
2848 Male, age 76, right hemisphere 29.2
Subiculum
nTPM: 27.4
1901 Male, age 80, both hemispheres 31.4
1977 Female, age 85, both hemispheres 30.0
2619 Male, age 74, both hemispheres 26.3
2729 Female, age 91, right hemisphere 25.9
2042 Male, age 76, both hemispheres 25.7
2438 Female, age 94, left hemisphere 25.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.7
Samples: 197

Max nTPM: 57.1
Min nTPM: 19.6
Std nTPM: 7.4
Median nTPM: 31.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 57.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 52.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 51.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 51.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 49.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 49.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 49.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 48.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 48.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 48.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 47.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 76.7
FF:10169-103B7 60 years, female 80.5
FF:10153-102I9 76 years, female 72.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 49.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 49.5
Samples: 4

Max nTPM: 59.8
Min nTPM: 36.3
Sample A Female 59.8
Sample B Female 46.1
Sample C Male 55.9
Sample D Male 36.3
Entorhinal cortex
nTPM: 46.1
Samples: 4

Max nTPM: 53.1
Min nTPM: 39.1
Sample A Female 50.4
Sample B Female 53.1
Sample C Male 41.8
Sample D Male 39.1
Subiculum
nTPM: 42.8
Samples: 4

Max nTPM: 54.7
Min nTPM: 37.9
Sample A Female 54.7
Sample B Female 37.9
Sample C Male 38.9
Sample D Male 39.5
Ventral hippocampus
nTPM: 41.3
Samples: 4

Max nTPM: 46.2
Min nTPM: 35.6
Sample A Female 44.8
Sample B Female 35.6
Sample C Male 38.6
Sample D Male 46.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 112.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 111.4
Samples: 4

Max nTPM: 115.1
Min nTPM: 106.9
Sample A Male 111.7
Sample B Male 115.1
Sample C Female 106.9
Sample D Female 111.8
Hippocampal formation
nTPM: 112.7
Samples: 4

Max nTPM: 121.7
Min nTPM: 105.0
Sample A Male 107.2
Sample B Male 117.0
Sample C Female 121.7
Sample D Female 105.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.6
587417 Antisense, RP_040831_01_E12, Mouse strain C57BL/6J (56 days, male) 17.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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