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CAB39
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.5 nTPM
HPA:34.5 nTPM
GTEx:37.2 nTPM
FANTOM5:75.3 Scaled Tags Per Million
Pig:59.3 nTPM
Mouse:133.8 nTPM
Allen mouse:11.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.5
2019 Male, age 18, unknown 34.9
2586 Male, age 75, left hemisphere 33.9
2411 Female, age 72, unknown 30.6
1827 Male, age 72, unknown 29.0
1870 Female, age 42, unknown 27.6
2666 Male, age 74, left hemisphere 26.9
1833 Male, age 53, unknown 26.3
1830 Male, age 51, unknown 26.2
2219 Male, age 76, both hemispheres 25.9
2828 Female, age 72, unknown 23.3
Dorsal raphe nucleus
nTPM: 28.3
2047 Male, age 72, unknown 30.7
1828 Male, age 53, unknown 30.5
2298 Female, age 72, unknown 29.0
2750 Male, age 76, both hemispheres 27.4
2016 Female, age 72, unknown 24.1
Inferior colliculus
nTPM: 26.6
2097 Female, age 72, unknown 28.6
1848 Female, age 42, unknown 27.4
1890 Male, age 53, unknown 25.8
2849 Male, age 72, unknown 24.7
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Pedunculopontine tegmental nucleus
nTPM: 29.4
2338 Male, age 61, both hemispheres 30.9
2334 Male, age 80, both hemispheres 30.8
1921 Female, age 85, both hemispheres 26.5
Periaquaductal grey, anterior
nTPM: 29.3
1947 Male, age 18, unknown 30.0
2502 Female, age 75, unknown 29.1
1795 Male, age 51, unknown 28.8
Periaquaductal grey, dorsal
nTPM: 24.0
1840 Male, age 53, unknown 24.8
1831 Male, age 72, unknown 24.4
2464 Female, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 22.5
Periaquaductal grey, lateral
nTPM: 24.3
2272 Male, age 74, both hemispheres 26.6
2053 Male, age 18, unknown 24.7
2140 Male, age 76, both hemispheres 21.5
Pretectal area
nTPM: 29.6
2007 Male, age 72, unknown 37.0
1817 Female, age 42, unknown 36.0
1816 Male, age 51, unknown 35.9
1944 Female, age 72, unknown 34.2
1815 Male, age 53, unknown 30.6
2407 Male, age 75, both hemispheres 28.2
2224 Female, age 72, unknown 26.6
2273 Male, age 74, both hemispheres 26.3
2667 Female, age 75, unknown 25.7
2825 Male, age 18, unknown 24.8
2316 Male, age 76, right hemisphere 20.9
Red nucleus
nTPM: 29.1
1821 Female, age 72, unknown 34.1
2725 Female, age 75, unknown 31.6
2785 Male, age 18, unknown 31.3
2584 Male, age 75, left hemisphere 30.0
2503 Female, age 72, unknown 29.5
2588 Male, age 74, left hemisphere 29.5
1865 Male, age 51, unknown 28.9
1954 Female, age 42, unknown 28.0
2769 Male, age 72, unknown 27.3
2227 Male, age 72, unknown 27.0
1904 Male, age 53, unknown 26.3
2823 Male, age 76, right hemisphere 25.2
Substantia nigra
nTPM: 34.5
1941 Male, age 53, unknown 39.5
1916 Female, age 42, unknown 37.6
2409 Female, age 72, unknown 37.4
1889 Female, age 72, unknown 34.8
2590 Female, age 75, unknown 34.4
2241 Male, age 72, unknown 33.9
1851 Male, age 51, unknown 33.5
2583 Male, age 75, right hemisphere 33.5
2665 Male, age 74, both hemispheres 32.3
2699 Male, age 18, unknown 28.3
Superior colliculus
nTPM: 27.6
2087 Female, age 72, unknown 30.0
2587 Male, age 74, left hemisphere 29.2
2668 Female, age 75, unknown 28.9
2664 Male, age 75, both hemispheres 28.5
2261 Male, age 18, unknown 28.3
1796 Male, age 53, unknown 27.9
1839 Male, age 51, unknown 26.9
1895 Male, age 76, right hemisphere 26.9
1913 Female, age 42, unknown 25.8
1995 Male, age 72, unknown 23.8
Ventral tegmental area
nTPM: 29.6
2410 Female, age 72, unknown 35.5
2218 Male, age 76, both hemispheres 29.7
1915 Female, age 42, unknown 29.2
2223 Female, age 72, unknown 29.1
1942 Male, age 51, unknown 27.6
2021 Male, age 53, unknown 26.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.2
Samples: 139

Max nTPM: 81.7
Min nTPM: 21.5
Std nTPM: 8.8
Median nTPM: 35.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 74.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 66.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 64.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 52.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 51.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 51.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 49.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 49.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 49.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 49.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.3
FF:10158-103A5 76 years, female 75.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.3
Pig sample Sample description nTPM
Midbrain
nTPM: 59.3
Samples: 4

Max nTPM: 66.7
Min nTPM: 51.5
Sample A Female 63.2
Sample B Female 51.5
Sample C Male 66.7
Sample D Male 55.9
Periaqueductal gray
nTPM: 45.5
Samples: 3

Max nTPM: 51.6
Min nTPM: 41.7
Sample B Female 43.2
Sample C Male 51.6
Sample D Male 41.7
Substantia nigra
nTPM: 52.1
Samples: 4

Max nTPM: 65.0
Min nTPM: 42.3
Sample A Female 65.0
Sample B Female 43.6
Sample C Male 57.3
Sample D Male 42.3
Superior colliculi
nTPM: 58.6
Samples: 4

Max nTPM: 76.3
Min nTPM: 35.5
Sample A Female 65.7
Sample B Female 35.5
Sample C Male 76.3
Sample D Male 56.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 133.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 133.8
Samples: 4

Max nTPM: 139.4
Min nTPM: 124.5
Sample A Male 124.5
Sample B Male 137.7
Sample C Female 139.4
Sample D Female 133.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.4
587417 Antisense, RP_040831_01_E12, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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