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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:55.2 nTPM
HPA:55.2 nTPM
GTEx:36.0 nTPM
FANTOM5:17.9 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:25.3 nTPM
Allen mouse:0.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA055338Antibody HPA056015
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 55.2
Sample id Sample description nTPM
Hippocampus
nTPM: 55.2
2529 Female, age 94, left hemisphere 59.7
2148 Female, age 91, left hemisphere 57.4
1911 Female, age 85, right hemisphere 56.1
1855 Male, age 76, left hemisphere 55.5
2621 Female, age 67, right hemisphere 51.3
1898 Male, age 80, left hemisphere 51.1
Dentate gyrus
nTPM: 50.9
2528 Male, age 74, both hemispheres 56.2
2246 Female, age 85, both hemispheres 53.6
2530 Female, age 94, left hemisphere 49.5
2531 Female, age 67, both hemispheres 49.1
2010 Male, age 76, both hemispheres 48.7
1927 Female, age 91, both hemispheres 48.2
Entorhinal gyrus
nTPM: 51.4
2117 Female, age 91, right hemisphere 60.1
1938 Female, age 85, left hemisphere 54.7
1787 Male, age 76, left hemisphere 51.8
2686 Male, age 75, right hemisphere 50.8
2764 Male, age 80, right hemisphere 47.0
2613 Female, age 94, left hemisphere 43.7
Hippocampus, CA1
nTPM: 52.6
2082 Female, age 91, right hemisphere 59.0
2527 Male, age 74, both hemispheres 57.7
1873 Female, age 85, both hemispheres 57.3
2045 Male, age 76, both hemispheres 47.4
2749 Male, age 80, left hemisphere 41.6
Hippocampus, CA2
nTPM: 51.4
2113 Female, age 91, right hemisphere 62.0
2437 Female, age 94, left hemisphere 53.1
1963 Male, age 80, left hemisphere 50.8
1940 Female, age 85, left hemisphere 49.2
2249 Male, age 74, both hemispheres 48.6
1892 Male, age 76, both hemispheres 44.4
Hippocampus, CA3
nTPM: 49.2
2861 Female, age 67, both hemispheres 57.8
1891 Female, age 85, both hemispheres 54.4
2436 Male, age 74, both hemispheres 48.8
1867 Male, age 76, both hemispheres 47.8
2620 Female, age 94, left hemisphere 44.5
2137 Male, age 80, left hemisphere 42.0
Parahippocampal cortex
nTPM: 51.2
2692 Male, age 74, both hemispheres 57.8
2622 Female, age 67, right hemisphere 55.8
1933 Female, age 85, both hemispheres 55.6
2018 Male, age 76, both hemispheres 54.8
2245 Female, age 91, both hemispheres 51.0
2250 Female, age 67, right hemisphere 49.6
1990 Female, age 91, right hemisphere 47.8
2532 Female, age 72, left hemisphere 46.8
2693 Female, age 94, both hemispheres 46.8
1850 Male, age 80, both hemispheres 46.5
Perirhinal gyrus
nTPM: 47.5
1847 Female, age 91, left hemisphere 50.6
1841 Female, age 85, right hemisphere 49.0
1794 Male, age 80, right hemisphere 47.9
2521 Female, age 94, right hemisphere 45.8
2848 Male, age 76, right hemisphere 44.1
Subiculum
nTPM: 53.2
2729 Female, age 91, right hemisphere 64.1
2619 Male, age 74, both hemispheres 60.4
2042 Male, age 76, both hemispheres 50.9
2438 Female, age 94, left hemisphere 49.6
1977 Female, age 85, both hemispheres 48.5
1901 Male, age 80, both hemispheres 46.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.0
Samples: 197

Max nTPM: 89.1
Min nTPM: 8.8
Std nTPM: 15.9
Median nTPM: 33.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 89.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 86.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 77.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 75.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 73.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 70.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 69.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 68.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 68.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 67.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 65.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.9
FF:10153-102I9 76 years, female 19.1
FF:10169-103B7 60 years, female 16.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.7
Samples: 4

Max nTPM: 24.5
Min nTPM: 14.5
Sample A Female 24.5
Sample B Female 18.2
Sample C Male 21.7
Sample D Male 14.5
Entorhinal cortex
nTPM: 20.1
Samples: 4

Max nTPM: 22.3
Min nTPM: 16.7
Sample A Female 21.8
Sample B Female 19.5
Sample C Male 22.3
Sample D Male 16.7
Subiculum
nTPM: 25.1
Samples: 4

Max nTPM: 31.3
Min nTPM: 20.6
Sample A Female 31.3
Sample B Female 25.1
Sample C Male 23.2
Sample D Male 20.6
Ventral hippocampus
nTPM: 24.0
Samples: 4

Max nTPM: 33.2
Min nTPM: 19.8
Sample A Female 22.5
Sample B Female 20.4
Sample C Male 33.2
Sample D Male 19.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.8
Samples: 4

Max nTPM: 25.0
Min nTPM: 19.0
Sample A Male 23.0
Sample B Male 19.0
Sample C Female 25.0
Sample D Female 20.1
Hippocampal formation
nTPM: 25.3
Samples: 4

Max nTPM: 30.5
Min nTPM: 22.0
Sample A Male 22.1
Sample B Male 22.0
Sample C Female 30.5
Sample D Female 26.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
69980256 Antisense, RP_050512_04_B10, Mouse strain C57BL/6J (56 days, male) 2.5
71213683 Antisense, RP_050816_04_D08, Mouse strain C57BL/6J (56 days, male) 0.4
70608598 Antisense, RP_050630_01_F12, Mouse strain C57BL/6J (56 days, male) 0.4
75080694 Antisense, RP_060412_04_G10, Mouse strain C57BL/6J (56 days, male) 0.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.