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TNS3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.3 nTPM
HPA:63.3 nTPM
GTEx:49.9 nTPM
FANTOM5:29.5 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:28.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.6
2828 Female, age 72, unknown 67.1
2219 Male, age 76, both hemispheres 62.5
2586 Male, age 75, left hemisphere 61.7
1827 Male, age 72, unknown 59.1
2666 Male, age 74, left hemisphere 58.6
1870 Female, age 42, unknown 54.7
1833 Male, age 53, unknown 53.0
2411 Female, age 72, unknown 52.0
1830 Male, age 51, unknown 50.1
2019 Male, age 18, unknown 47.5
Dorsal raphe nucleus
nTPM: 60.8
2016 Female, age 72, unknown 65.9
2047 Male, age 72, unknown 64.6
1828 Male, age 53, unknown 62.9
2298 Female, age 72, unknown 56.4
2750 Male, age 76, both hemispheres 54.0
Inferior colliculus
nTPM: 60.7
1848 Female, age 42, unknown 65.9
2849 Male, age 72, unknown 61.8
1890 Male, age 53, unknown 61.5
2097 Female, age 72, unknown 53.6
Median raphe nucleus
nTPM: 49.3
2220 Male, age 76, midline 49.3
Pedunculopontine tegmental nucleus
nTPM: 60.8
2338 Male, age 61, both hemispheres 72.0
1921 Female, age 85, both hemispheres 57.2
2334 Male, age 80, both hemispheres 53.3
Periaquaductal grey, anterior
nTPM: 61.6
1795 Male, age 51, unknown 65.3
2502 Female, age 75, unknown 64.3
1947 Male, age 18, unknown 55.2
Periaquaductal grey, dorsal
nTPM: 63.3
1840 Male, age 53, unknown 72.3
2850 Male, age 76, both hemispheres 61.5
2464 Female, age 72, unknown 60.3
1831 Male, age 72, unknown 59.2
Periaquaductal grey, lateral
nTPM: 63.2
2053 Male, age 18, unknown 70.4
2140 Male, age 76, both hemispheres 65.3
2272 Male, age 74, both hemispheres 54.0
Pretectal area
nTPM: 59.8
2316 Male, age 76, right hemisphere 65.5
1816 Male, age 51, unknown 65.3
1944 Female, age 72, unknown 64.6
2667 Female, age 75, unknown 63.4
2825 Male, age 18, unknown 63.3
1817 Female, age 42, unknown 59.6
1815 Male, age 53, unknown 57.9
2407 Male, age 75, both hemispheres 56.8
2224 Female, age 72, unknown 56.2
2273 Male, age 74, both hemispheres 52.5
2007 Male, age 72, unknown 52.4
Red nucleus
nTPM: 56.2
2503 Female, age 72, unknown 60.6
2227 Male, age 72, unknown 60.1
2823 Male, age 76, right hemisphere 59.9
2769 Male, age 72, unknown 59.8
2584 Male, age 75, left hemisphere 59.3
1954 Female, age 42, unknown 59.2
2588 Male, age 74, left hemisphere 57.3
1904 Male, age 53, unknown 55.1
1821 Female, age 72, unknown 54.8
1865 Male, age 51, unknown 52.7
2785 Male, age 18, unknown 47.7
2725 Female, age 75, unknown 47.5
Substantia nigra
nTPM: 61.6
2699 Male, age 18, unknown 79.1
2665 Male, age 74, both hemispheres 69.5
2583 Male, age 75, right hemisphere 63.2
1916 Female, age 42, unknown 61.8
2590 Female, age 75, unknown 60.2
1851 Male, age 51, unknown 59.7
2241 Male, age 72, unknown 57.8
1889 Female, age 72, unknown 56.8
2409 Female, age 72, unknown 55.7
1941 Male, age 53, unknown 52.2
Superior colliculus
nTPM: 59.3
2087 Female, age 72, unknown 64.5
2668 Female, age 75, unknown 64.5
2261 Male, age 18, unknown 63.1
2664 Male, age 75, both hemispheres 60.8
1839 Male, age 51, unknown 59.2
1796 Male, age 53, unknown 59.1
2587 Male, age 74, left hemisphere 57.3
1995 Male, age 72, unknown 56.8
1913 Female, age 42, unknown 54.2
1895 Male, age 76, right hemisphere 53.4
Ventral tegmental area
nTPM: 58.5
2021 Male, age 53, unknown 63.1
1942 Male, age 51, unknown 61.5
1915 Female, age 42, unknown 58.5
2218 Male, age 76, both hemispheres 58.2
2410 Female, age 72, unknown 56.5
2223 Female, age 72, unknown 53.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.9
Samples: 139

Max nTPM: 138.9
Min nTPM: 8.1
Std nTPM: 25.8
Median nTPM: 43.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 138.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 129.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 122.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 117.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 116.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 112.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 102.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 101.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 101.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 99.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 92.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.5
FF:10158-103A5 76 years, female 29.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 43.8
Min nTPM: 19.9
Sample A Female 43.8
Sample B Female 25.4
Sample C Male 25.7
Sample D Male 19.9
Periaqueductal gray
nTPM: 24.9
Samples: 3

Max nTPM: 27.3
Min nTPM: 22.4
Sample B Female 25.1
Sample C Male 27.3
Sample D Male 22.4
Substantia nigra
nTPM: 30.9
Samples: 4

Max nTPM: 32.4
Min nTPM: 29.7
Sample A Female 30.8
Sample B Female 30.5
Sample C Male 29.7
Sample D Male 32.4
Superior colliculi
nTPM: 24.5
Samples: 4

Max nTPM: 27.0
Min nTPM: 21.1
Sample A Female 27.0
Sample B Female 21.1
Sample C Male 24.3
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 32.2
Min nTPM: 25.0
Sample A Male 26.4
Sample B Male 25.0
Sample C Female 32.2
Sample D Female 31.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69980256 Antisense, RP_050512_04_B10, Mouse strain C57BL/6J (56 days, male) 0.6
71213683 Antisense, RP_050816_04_D08, Mouse strain C57BL/6J (56 days, male) 0.4
75080694 Antisense, RP_060412_04_G10, Mouse strain C57BL/6J (56 days, male) 0.2
70608598 Antisense, RP_050630_01_F12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.