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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:45.8 nTPM
HPA:45.8 nTPM
GTEx:48.3 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:35.4 nTPM
Mouse:58.4 nTPM
Allen mouse:10.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020265Antibody HPA027735
Glial cells Not detectedNot detected
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.8
Sample id Sample description nTPM
Hippocampus
nTPM: 45.0
1898 Male, age 80, left hemisphere 47.6
1855 Male, age 76, left hemisphere 47.1
2148 Female, age 91, left hemisphere 45.2
2529 Female, age 94, left hemisphere 44.3
2621 Female, age 67, right hemisphere 43.9
1911 Female, age 85, right hemisphere 41.6
Dentate gyrus
nTPM: 43.3
2530 Female, age 94, left hemisphere 45.8
1927 Female, age 91, both hemispheres 45.5
2010 Male, age 76, both hemispheres 43.9
2528 Male, age 74, both hemispheres 42.1
2531 Female, age 67, both hemispheres 41.3
2246 Female, age 85, both hemispheres 41.0
Entorhinal gyrus
nTPM: 45.3
2613 Female, age 94, left hemisphere 49.2
2764 Male, age 80, right hemisphere 47.5
1787 Male, age 76, left hemisphere 46.2
1938 Female, age 85, left hemisphere 45.7
2686 Male, age 75, right hemisphere 42.8
2117 Female, age 91, right hemisphere 40.6
Hippocampus, CA1
nTPM: 43.5
2749 Male, age 80, left hemisphere 49.7
1873 Female, age 85, both hemispheres 45.4
2045 Male, age 76, both hemispheres 41.0
2082 Female, age 91, right hemisphere 40.9
2527 Male, age 74, both hemispheres 40.8
Hippocampus, CA2
nTPM: 44.3
1963 Male, age 80, left hemisphere 50.2
1892 Male, age 76, both hemispheres 47.3
2437 Female, age 94, left hemisphere 44.2
1940 Female, age 85, left hemisphere 43.1
2113 Female, age 91, right hemisphere 41.1
2249 Male, age 74, both hemispheres 40.1
Hippocampus, CA3
nTPM: 43.8
2137 Male, age 80, left hemisphere 48.1
1867 Male, age 76, both hemispheres 46.1
2861 Female, age 67, both hemispheres 45.2
2620 Female, age 94, left hemisphere 41.7
1891 Female, age 85, both hemispheres 41.5
2436 Male, age 74, both hemispheres 40.4
Parahippocampal cortex
nTPM: 43.8
2245 Female, age 91, both hemispheres 47.1
1850 Male, age 80, both hemispheres 45.2
2532 Female, age 72, left hemisphere 45.2
1933 Female, age 85, both hemispheres 44.7
2250 Female, age 67, right hemisphere 43.4
2693 Female, age 94, both hemispheres 42.6
1990 Female, age 91, right hemisphere 42.5
2692 Male, age 74, both hemispheres 42.5
2622 Female, age 67, right hemisphere 42.4
2018 Male, age 76, both hemispheres 42.3
Perirhinal gyrus
nTPM: 45.8
1794 Male, age 80, right hemisphere 49.2
1847 Female, age 91, left hemisphere 47.7
1841 Female, age 85, right hemisphere 45.9
2521 Female, age 94, right hemisphere 44.1
2848 Male, age 76, right hemisphere 42.3
Subiculum
nTPM: 42.8
2438 Female, age 94, left hemisphere 47.0
1901 Male, age 80, both hemispheres 43.5
2619 Male, age 74, both hemispheres 42.6
1977 Female, age 85, both hemispheres 42.0
2042 Male, age 76, both hemispheres 41.3
2729 Female, age 91, right hemisphere 40.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 48.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 48.3
Samples: 197

Max nTPM: 81.5
Min nTPM: 21.1
Std nTPM: 10.2
Median nTPM: 47.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 81.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 79.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 78.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 74.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 74.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 70.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 68.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 67.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 66.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 66.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 66.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 45.7
FF:10169-103B7 60 years, female 47.0
FF:10153-102I9 76 years, female 44.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 35.5
Samples: 4

Max nTPM: 44.0
Min nTPM: 23.9
Sample A Female 44.0
Sample B Female 34.1
Sample C Male 39.8
Sample D Male 23.9
Entorhinal cortex
nTPM: 34.9
Samples: 4

Max nTPM: 37.9
Min nTPM: 31.7
Sample A Female 33.8
Sample B Female 37.9
Sample C Male 36.1
Sample D Male 31.7
Subiculum
nTPM: 32.9
Samples: 4

Max nTPM: 43.8
Min nTPM: 28.3
Sample A Female 43.8
Sample B Female 28.3
Sample C Male 30.9
Sample D Male 28.6
Ventral hippocampus
nTPM: 34.5
Samples: 4

Max nTPM: 45.3
Min nTPM: 24.4
Sample A Female 31.4
Sample B Female 24.4
Sample C Male 45.3
Sample D Male 36.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 58.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.8
Samples: 4

Max nTPM: 59.0
Min nTPM: 49.9
Sample A Male 49.9
Sample B Male 52.3
Sample C Female 59.0
Sample D Female 58.0
Hippocampal formation
nTPM: 58.4
Samples: 4

Max nTPM: 62.1
Min nTPM: 54.0
Sample A Male 61.1
Sample B Male 56.4
Sample C Female 54.0
Sample D Female 62.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
74819497 Antisense, RP_060315_02_F12, Mouse strain C57BL/6J (56 days, male) 13.1
69838419 Antisense, RP_050303_01_D10, Mouse strain C57BL/6J (56 days, male) 8.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.