ABOUTMENU
HELP
NEWS
DBNL
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.8 nTPM
HPA:44.8 nTPM
GTEx:51.0 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:48.6 nTPM
Mouse:46.1 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.4
2586 Male, age 75, left hemisphere 48.2
2411 Female, age 72, unknown 45.0
2666 Male, age 74, left hemisphere 42.7
2828 Female, age 72, unknown 42.6
1827 Male, age 72, unknown 42.5
2019 Male, age 18, unknown 41.4
1833 Male, age 53, unknown 41.0
1870 Female, age 42, unknown 41.0
2219 Male, age 76, both hemispheres 40.4
1830 Male, age 51, unknown 39.2
Dorsal raphe nucleus
nTPM: 41.8
2047 Male, age 72, unknown 44.5
2298 Female, age 72, unknown 42.9
2750 Male, age 76, both hemispheres 42.0
1828 Male, age 53, unknown 41.0
2016 Female, age 72, unknown 38.7
Inferior colliculus
nTPM: 39.5
2849 Male, age 72, unknown 40.3
1848 Female, age 42, unknown 39.7
1890 Male, age 53, unknown 39.1
2097 Female, age 72, unknown 39.0
Median raphe nucleus
nTPM: 43.5
2220 Male, age 76, midline 43.5
Pedunculopontine tegmental nucleus
nTPM: 43.0
2338 Male, age 61, both hemispheres 44.2
1921 Female, age 85, both hemispheres 42.6
2334 Male, age 80, both hemispheres 42.2
Periaquaductal grey, anterior
nTPM: 43.6
1795 Male, age 51, unknown 44.1
2502 Female, age 75, unknown 43.6
1947 Male, age 18, unknown 43.0
Periaquaductal grey, dorsal
nTPM: 40.6
1840 Male, age 53, unknown 41.8
2850 Male, age 76, both hemispheres 40.3
1831 Male, age 72, unknown 40.2
2464 Female, age 72, unknown 39.9
Periaquaductal grey, lateral
nTPM: 38.1
2053 Male, age 18, unknown 40.2
2272 Male, age 74, both hemispheres 37.6
2140 Male, age 76, both hemispheres 36.5
Pretectal area
nTPM: 40.8
1816 Male, age 51, unknown 43.5
2007 Male, age 72, unknown 43.5
2407 Male, age 75, both hemispheres 42.9
1815 Male, age 53, unknown 41.2
1817 Female, age 42, unknown 41.2
1944 Female, age 72, unknown 41.2
2825 Male, age 18, unknown 41.0
2224 Female, age 72, unknown 39.9
2667 Female, age 75, unknown 39.2
2273 Male, age 74, both hemispheres 37.9
2316 Male, age 76, right hemisphere 37.6
Red nucleus
nTPM: 40.4
2584 Male, age 75, left hemisphere 45.2
1821 Female, age 72, unknown 42.1
1865 Male, age 51, unknown 41.5
2588 Male, age 74, left hemisphere 41.5
2503 Female, age 72, unknown 40.0
2785 Male, age 18, unknown 39.8
2769 Male, age 72, unknown 39.7
1904 Male, age 53, unknown 39.5
2227 Male, age 72, unknown 39.3
1954 Female, age 42, unknown 39.1
2725 Female, age 75, unknown 38.8
2823 Male, age 76, right hemisphere 38.8
Substantia nigra
nTPM: 44.0
1916 Female, age 42, unknown 47.8
1851 Male, age 51, unknown 47.2
2665 Male, age 74, both hemispheres 46.7
2583 Male, age 75, right hemisphere 45.2
1941 Male, age 53, unknown 44.7
2699 Male, age 18, unknown 44.0
2590 Female, age 75, unknown 43.4
1889 Female, age 72, unknown 43.1
2241 Male, age 72, unknown 42.0
2409 Female, age 72, unknown 35.7
Superior colliculus
nTPM: 41.2
2668 Female, age 75, unknown 44.9
2664 Male, age 75, both hemispheres 44.4
1796 Male, age 53, unknown 43.6
1913 Female, age 42, unknown 41.7
2587 Male, age 74, left hemisphere 41.0
2261 Male, age 18, unknown 40.0
2087 Female, age 72, unknown 39.4
1839 Male, age 51, unknown 39.3
1895 Male, age 76, right hemisphere 38.9
1995 Male, age 72, unknown 38.6
Ventral tegmental area
nTPM: 44.8
2410 Female, age 72, unknown 50.0
2218 Male, age 76, both hemispheres 45.3
2223 Female, age 72, unknown 44.4
1915 Female, age 42, unknown 44.1
2021 Male, age 53, unknown 42.8
1942 Male, age 51, unknown 42.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.0
Samples: 139

Max nTPM: 91.8
Min nTPM: 24.6
Std nTPM: 10.3
Median nTPM: 50.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 91.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 80.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 72.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 71.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 71.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 69.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 67.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 66.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 65.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 65.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.6
Pig sample Sample description nTPM
Midbrain
nTPM: 48.4
Samples: 4

Max nTPM: 56.8
Min nTPM: 41.4
Sample A Female 56.8
Sample B Female 42.9
Sample C Male 52.5
Sample D Male 41.4
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 43.0
Min nTPM: 31.5
Sample B Female 39.5
Sample C Male 43.0
Sample D Male 31.5
Substantia nigra
nTPM: 45.9
Samples: 4

Max nTPM: 51.8
Min nTPM: 39.7
Sample A Female 51.8
Sample B Female 39.7
Sample C Male 51.7
Sample D Male 40.5
Superior colliculi
nTPM: 48.6
Samples: 4

Max nTPM: 55.0
Min nTPM: 36.6
Sample A Female 51.5
Sample B Female 36.6
Sample C Male 55.0
Sample D Male 51.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 50.9
Min nTPM: 41.3
Sample A Male 50.9
Sample B Male 44.6
Sample C Female 41.3
Sample D Female 47.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
74819497 Antisense, RP_060315_02_F12, Mouse strain C57BL/6J (56 days, male) 8.9
69838419 Antisense, RP_050303_01_D10, Mouse strain C57BL/6J (56 days, male) 6.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.