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CDK9
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:43.7 nTPM
HPA:43.7 nTPM
GTEx:47.4 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:26.3 nTPM
Mouse:54.8 nTPM
Allen mouse:11.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA006738Antibody CAB004216
Glial cells HighHigh
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.3
2289 Male, age 61, right hemisphere 39.7
2288 Male, age 75, left hemisphere 39.5
1781 Male, age 74, unknown 37.4
1854 Male, age 80, left hemisphere 34.8
2481 Female, age 94, left hemisphere 34.8
2290 Female, age 72, unknown 32.7
1857 Female, age 85, left hemisphere 31.8
2846 Female, age 79, unknown 31.8
Claustrum
nTPM: 42.8
2568 Male, age 61, both hemispheres 49.3
2284 Female, age 91, both hemispheres 45.5
2645 Female, age 72, unknown 44.6
2491 Male, age 75, both hemispheres 43.9
2292 Female, age 85, both hemispheres 43.8
1956 Male, age 74, unknown 41.4
2198 Male, age 80, both hemispheres 40.9
2196 Female, age 79, unknown 39.5
2392 Female, age 94, both hemispheres 36.8
Globus pallidus, externus
nTPM: 38.9
2567 Female, age 72, unknown 42.6
2772 Female, age 79, unknown 40.8
2646 Male, age 61, right hemisphere 38.1
1996 Male, age 80, right hemisphere 36.6
2395 Male, age 75, both hemispheres 36.5
Globus pallidus, internus
nTPM: 39.0
2778 Female, age 91, both hemispheres 44.3
2566 Female, age 72, unknown 43.8
2111 Female, age 85, right hemisphere 38.3
2037 Male, age 80, right hemisphere 37.8
1818 Male, age 74, unknown 37.2
2483 Female, age 94, right hemisphere 35.8
2287 Male, age 75, right hemisphere 35.7
Nucleus accumbens
nTPM: 36.1
2732 Male, age 80, right hemisphere 47.9
2698 Female, age 72, unknown 36.3
1783 Male, age 74, unknown 36.2
2824 Male, age 61, right hemisphere 34.5
1856 Female, age 91, right hemisphere 34.4
1806 Female, age 85, left hemisphere 34.2
2286 Male, age 75, left hemisphere 33.9
2391 Female, age 94, left hemisphere 31.8
Nucleus basalis of Meynert
nTPM: 37.1
2569 Male, age 61, both hemispheres 42.5
2821 Male, age 75, both hemispheres 37.0
2484 Female, age 94, left hemisphere 35.3
2393 Male, age 80, right hemisphere 33.5
Nucleus of the diagonal band
nTPM: 43.7
1979 Male, age 74, unknown 47.3
2029 Male, age 61, right hemisphere 47.3
2195 Female, age 85, both hemispheres 43.1
2775 Male, age 80, right hemisphere 43.0
1812 Female, age 91, both hemispheres 37.8
Olfactory tubercle
nTPM: 42.4
2487 Female, age 94, left hemisphere 45.5
1998 Female, age 91, both hemispheres 44.0
2856 Male, age 75, right hemisphere 40.3
1846 Male, age 80, right hemisphere 40.0
Putamen
nTPM: 35.5
2647 Male, age 75, left hemisphere 40.9
2489 Female, age 72, unknown 36.8
1937 Female, age 91, right hemisphere 36.4
1838 Male, age 80, right hemisphere 34.7
1829 Male, age 74, unknown 33.7
2482 Female, age 94, left hemisphere 33.6
2466 Female, age 79, unknown 32.2
Septal nuclei
nTPM: 43.3
2059 Female, age 85, both hemispheres 50.5
1960 Male, age 74, unknown 45.3
2629 Female, age 94, right hemisphere 43.9
2031 Female, age 72, unknown 42.5
2009 Female, age 91, both hemispheres 42.0
2199 Male, age 80, right hemisphere 39.5
2394 Male, age 61, left hemisphere 39.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.8
Samples: 246

Max nTPM: 83.0
Min nTPM: 16.0
Std nTPM: 9.7
Median nTPM: 39.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 83.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 80.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 73.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 67.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 63.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 60.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 59.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 58.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 57.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 56.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 56.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.4
Samples: 246

Max nTPM: 108.2
Min nTPM: 20.1
Std nTPM: 14.0
Median nTPM: 45.3
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 108.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 101.7
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 98.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 89.3
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 88.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 83.1
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 80.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 79.2
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 77.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 74.0
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 73.2
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Brain - Putamen (basal ganglia)
Average nTPM: 37.6
Samples: 205

Max nTPM: 59.6
Min nTPM: 17.6
Std nTPM: 7.1
Median nTPM: 37.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 59.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 58.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 55.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 52.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 52.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 52.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 52.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 51.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 51.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 50.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 50.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.1
FF:10164-103B2 76 years, female 30.1
Globus pallidus
Scaled Tags Per Million: 20.9
FF:10161-103A8 76 years, female 26.9
FF:10175-103C4 60 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 23.4
FF:10037-101F1 23-56 years, mixed 23.4
Putamen
Scaled Tags Per Million: 20.6
FF:10176-103C5 60 years, female 20.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.3
Pig sample Sample description nTPM
Caudate
nTPM: 26.3
Samples: 4

Max nTPM: 30.8
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 28.2
Sample C Male 30.8
Sample D Male 23.3
Putamen
nTPM: 25.6
Samples: 4

Max nTPM: 30.4
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 22.1
Sample C Male 30.4
Sample D Male 28.8
Septum
nTPM: 25.0
Samples: 4

Max nTPM: 27.8
Min nTPM: 22.5
Sample A Female 24.2
Sample B Female 25.5
Sample C Male 27.8
Sample D Male 22.5
Ventral pallidum
nTPM: 24.7
Samples: 4

Max nTPM: 29.9
Min nTPM: 19.6
Sample A Female 19.6
Sample B Female 27.0
Sample C Male 29.9
Sample D Male 22.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 54.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 51.6
Samples: 4

Max nTPM: 52.9
Min nTPM: 49.9
Sample A Male 52.0
Sample B Male 51.6
Sample C Female 52.9
Sample D Female 49.9
Septum
nTPM: 54.8
Samples: 4

Max nTPM: 56.7
Min nTPM: 52.7
Sample A Male 54.6
Sample B Male 56.7
Sample C Female 55.3
Sample D Female 52.7
Ventral forebrain
nTPM: 54.6
Samples: 4

Max nTPM: 61.3
Min nTPM: 50.1
Sample A Male 50.1
Sample B Male 53.8
Sample C Female 61.3
Sample D Female 53.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.2
293258 Antisense, RP_040617_01_A05, Mouse strain C57BL/6J (56 days, male) 13.1
81599610 Antisense, RP_071126_01_B08, Mouse strain C57BL/6J (56 days, male) 9.3
Pallidum
Expression energy: 8.3
293258 Antisense, RP_040617_01_A05, Mouse strain C57BL/6J (56 days, male) 10.3
81599610 Antisense, RP_071126_01_B08, Mouse strain C57BL/6J (56 days, male) 6.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.