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CDK9
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:50.8 nTPM
HPA:50.8 nTPM
GTEx:58.0 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:55.2 nTPM
Allen mouse:13.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006738Antibody CAB004216
Glial cells HighHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Hippocampus
nTPM: 49.2
2148 Female, age 91, left hemisphere 61.3
2621 Female, age 67, right hemisphere 51.4
1911 Female, age 85, right hemisphere 48.2
2529 Female, age 94, left hemisphere 46.7
1898 Male, age 80, left hemisphere 45.8
1855 Male, age 76, left hemisphere 42.1
Dentate gyrus
nTPM: 49.4
2531 Female, age 67, both hemispheres 61.6
1927 Female, age 91, both hemispheres 52.7
2528 Male, age 74, both hemispheres 47.9
2530 Female, age 94, left hemisphere 47.3
2246 Female, age 85, both hemispheres 44.3
2010 Male, age 76, both hemispheres 42.7
Entorhinal gyrus
nTPM: 46.7
2613 Female, age 94, left hemisphere 53.1
2764 Male, age 80, right hemisphere 51.9
1787 Male, age 76, left hemisphere 44.8
2686 Male, age 75, right hemisphere 44.2
2117 Female, age 91, right hemisphere 44.1
1938 Female, age 85, left hemisphere 41.9
Hippocampus, CA1
nTPM: 45.4
2045 Male, age 76, both hemispheres 48.5
1873 Female, age 85, both hemispheres 47.3
2527 Male, age 74, both hemispheres 45.8
2749 Male, age 80, left hemisphere 42.8
2082 Female, age 91, right hemisphere 42.5
Hippocampus, CA2
nTPM: 45.8
2249 Male, age 74, both hemispheres 50.7
1940 Female, age 85, left hemisphere 49.1
1963 Male, age 80, left hemisphere 45.3
2437 Female, age 94, left hemisphere 43.8
1892 Male, age 76, both hemispheres 43.6
2113 Female, age 91, right hemisphere 42.5
Hippocampus, CA3
nTPM: 50.8
2620 Female, age 94, left hemisphere 70.0
2861 Female, age 67, both hemispheres 58.9
1867 Male, age 76, both hemispheres 47.5
1891 Female, age 85, both hemispheres 46.4
2137 Male, age 80, left hemisphere 43.3
2436 Male, age 74, both hemispheres 39.0
Parahippocampal cortex
nTPM: 42.9
2622 Female, age 67, right hemisphere 50.4
1990 Female, age 91, right hemisphere 45.3
2245 Female, age 91, both hemispheres 44.1
1933 Female, age 85, both hemispheres 43.0
2532 Female, age 72, left hemisphere 42.4
2250 Female, age 67, right hemisphere 41.7
2693 Female, age 94, both hemispheres 41.4
2692 Male, age 74, both hemispheres 41.0
2018 Male, age 76, both hemispheres 39.9
1850 Male, age 80, both hemispheres 39.8
Perirhinal gyrus
nTPM: 41.5
1794 Male, age 80, right hemisphere 43.0
2848 Male, age 76, right hemisphere 42.2
2521 Female, age 94, right hemisphere 41.9
1847 Female, age 91, left hemisphere 41.1
1841 Female, age 85, right hemisphere 39.4
Subiculum
nTPM: 45.3
2729 Female, age 91, right hemisphere 55.3
1901 Male, age 80, both hemispheres 45.2
2619 Male, age 74, both hemispheres 45.2
1977 Female, age 85, both hemispheres 43.8
2042 Male, age 76, both hemispheres 42.5
2438 Female, age 94, left hemisphere 40.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 58.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 58.0
Samples: 197

Max nTPM: 155.9
Min nTPM: 20.0
Std nTPM: 19.6
Median nTPM: 53.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 155.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 148.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 129.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 120.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 118.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 104.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 101.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 95.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 92.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 91.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 90.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.4
FF:10153-102I9 76 years, female 27.0
FF:10169-103B7 60 years, female 19.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 28.8
Samples: 4

Max nTPM: 33.7
Min nTPM: 25.5
Sample A Female 33.7
Sample B Female 29.6
Sample C Male 26.5
Sample D Male 25.5
Entorhinal cortex
nTPM: 28.3
Samples: 4

Max nTPM: 31.3
Min nTPM: 26.0
Sample A Female 27.7
Sample B Female 28.2
Sample C Male 31.3
Sample D Male 26.0
Subiculum
nTPM: 28.5
Samples: 4

Max nTPM: 35.3
Min nTPM: 23.4
Sample A Female 35.3
Sample B Female 27.0
Sample C Male 28.3
Sample D Male 23.4
Ventral hippocampus
nTPM: 29.1
Samples: 4

Max nTPM: 35.1
Min nTPM: 23.1
Sample A Female 27.4
Sample B Female 23.1
Sample C Male 35.1
Sample D Male 30.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 55.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.8
Samples: 4

Max nTPM: 56.9
Min nTPM: 52.3
Sample A Male 56.9
Sample B Male 55.8
Sample C Female 52.3
Sample D Female 54.1
Hippocampal formation
nTPM: 55.2
Samples: 4

Max nTPM: 57.5
Min nTPM: 52.0
Sample A Male 55.2
Sample B Male 56.1
Sample C Female 57.5
Sample D Female 52.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.6
293258 Antisense, RP_040617_01_A05, Mouse strain C57BL/6J (56 days, male) 15.7
81599610 Antisense, RP_071126_01_B08, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.