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CNPY3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:59.7 nTPM
HPA:59.7 nTPM
GTEx:34.8 nTPM
FANTOM5:26.6 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:53.5 nTPM
Allen mouse:9.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016560
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 59.7
Sample id Sample description nTPM
Hippocampus
nTPM: 59.3
2621 Female, age 67, right hemisphere 63.2
1855 Male, age 76, left hemisphere 60.6
2148 Female, age 91, left hemisphere 60.6
1898 Male, age 80, left hemisphere 58.3
1911 Female, age 85, right hemisphere 57.7
2529 Female, age 94, left hemisphere 55.6
Dentate gyrus
nTPM: 57.0
2530 Female, age 94, left hemisphere 60.1
2531 Female, age 67, both hemispheres 59.6
2010 Male, age 76, both hemispheres 58.0
2246 Female, age 85, both hemispheres 56.3
1927 Female, age 91, both hemispheres 55.1
2528 Male, age 74, both hemispheres 52.7
Entorhinal gyrus
nTPM: 59.7
2613 Female, age 94, left hemisphere 65.3
2117 Female, age 91, right hemisphere 60.6
1787 Male, age 76, left hemisphere 60.2
2764 Male, age 80, right hemisphere 59.8
1938 Female, age 85, left hemisphere 56.2
2686 Male, age 75, right hemisphere 56.0
Hippocampus, CA1
nTPM: 56.3
2045 Male, age 76, both hemispheres 58.7
2082 Female, age 91, right hemisphere 57.7
2749 Male, age 80, left hemisphere 55.6
1873 Female, age 85, both hemispheres 55.2
2527 Male, age 74, both hemispheres 54.5
Hippocampus, CA2
nTPM: 57.1
1940 Female, age 85, left hemisphere 62.5
2437 Female, age 94, left hemisphere 58.3
1892 Male, age 76, both hemispheres 57.3
2113 Female, age 91, right hemisphere 56.8
1963 Male, age 80, left hemisphere 55.7
2249 Male, age 74, both hemispheres 52.0
Hippocampus, CA3
nTPM: 56.2
2861 Female, age 67, both hemispheres 60.2
1867 Male, age 76, both hemispheres 57.3
2620 Female, age 94, left hemisphere 56.3
1891 Female, age 85, both hemispheres 55.0
2137 Male, age 80, left hemisphere 54.3
2436 Male, age 74, both hemispheres 53.9
Parahippocampal cortex
nTPM: 56.5
2018 Male, age 76, both hemispheres 59.1
2245 Female, age 91, both hemispheres 58.6
2532 Female, age 72, left hemisphere 58.2
2250 Female, age 67, right hemisphere 56.9
2622 Female, age 67, right hemisphere 56.9
2693 Female, age 94, both hemispheres 55.9
1850 Male, age 80, both hemispheres 55.6
1990 Female, age 91, right hemisphere 55.6
1933 Female, age 85, both hemispheres 55.2
2692 Male, age 74, both hemispheres 53.1
Perirhinal gyrus
nTPM: 55.9
1847 Female, age 91, left hemisphere 57.7
2848 Male, age 76, right hemisphere 56.8
2521 Female, age 94, right hemisphere 56.3
1794 Male, age 80, right hemisphere 55.5
1841 Female, age 85, right hemisphere 53.3
Subiculum
nTPM: 56.8
2042 Male, age 76, both hemispheres 59.5
2729 Female, age 91, right hemisphere 57.9
2619 Male, age 74, both hemispheres 56.6
2438 Female, age 94, left hemisphere 56.5
1901 Male, age 80, both hemispheres 55.5
1977 Female, age 85, both hemispheres 55.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.8
Samples: 197

Max nTPM: 63.8
Min nTPM: 18.6
Std nTPM: 7.5
Median nTPM: 33.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 63.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 58.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 57.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 55.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 55.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 51.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 51.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 50.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 50.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 49.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 48.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.6
FF:10153-102I9 76 years, female 32.3
FF:10169-103B7 60 years, female 20.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.2
Samples: 4

Max nTPM: 15.3
Min nTPM: 10.4
Sample A Female 15.3
Sample B Female 13.6
Sample C Male 13.4
Sample D Male 10.4
Entorhinal cortex
nTPM: 11.0
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.7
Sample A Female 11.9
Sample B Female 10.7
Sample C Male 11.8
Sample D Male 9.7
Subiculum
nTPM: 12.3
Samples: 4

Max nTPM: 14.7
Min nTPM: 10.4
Sample A Female 14.7
Sample B Female 11.9
Sample C Male 12.0
Sample D Male 10.4
Ventral hippocampus
nTPM: 13.6
Samples: 4

Max nTPM: 17.3
Min nTPM: 10.4
Sample A Female 13.3
Sample B Female 10.4
Sample C Male 17.3
Sample D Male 13.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 53.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 53.3
Samples: 4

Max nTPM: 58.9
Min nTPM: 49.9
Sample A Male 53.2
Sample B Male 49.9
Sample C Female 51.0
Sample D Female 58.9
Hippocampal formation
nTPM: 53.4
Samples: 4

Max nTPM: 58.5
Min nTPM: 45.5
Sample A Male 45.5
Sample B Male 52.4
Sample C Female 58.5
Sample D Female 57.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.0
70429483 Antisense, RP_050614_01_G07, Mouse strain C57BL/6J (56 days, male) 9.0

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