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CNPY3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.1 nTPM
HPA:63.1 nTPM
GTEx:43.3 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:15.4 nTPM
Mouse:39.7 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.9
2666 Male, age 74, left hemisphere 60.9
2828 Female, age 72, unknown 60.3
1833 Male, age 53, unknown 59.9
1830 Male, age 51, unknown 59.5
1870 Female, age 42, unknown 59.3
2586 Male, age 75, left hemisphere 56.9
1827 Male, age 72, unknown 56.8
2411 Female, age 72, unknown 56.1
2019 Male, age 18, unknown 54.9
2219 Male, age 76, both hemispheres 54.1
Dorsal raphe nucleus
nTPM: 58.9
2016 Female, age 72, unknown 59.8
2750 Male, age 76, both hemispheres 59.5
2298 Female, age 72, unknown 59.4
1828 Male, age 53, unknown 59.2
2047 Male, age 72, unknown 56.6
Inferior colliculus
nTPM: 57.2
2849 Male, age 72, unknown 60.0
1848 Female, age 42, unknown 57.2
2097 Female, age 72, unknown 55.9
1890 Male, age 53, unknown 55.7
Median raphe nucleus
nTPM: 59.6
2220 Male, age 76, midline 59.6
Pedunculopontine tegmental nucleus
nTPM: 63.1
2338 Male, age 61, both hemispheres 75.5
2334 Male, age 80, both hemispheres 60.6
1921 Female, age 85, both hemispheres 53.2
Periaquaductal grey, anterior
nTPM: 57.7
1795 Male, age 51, unknown 59.2
1947 Male, age 18, unknown 58.2
2502 Female, age 75, unknown 55.5
Periaquaductal grey, dorsal
nTPM: 58.6
2850 Male, age 76, both hemispheres 63.0
1831 Male, age 72, unknown 59.3
1840 Male, age 53, unknown 57.5
2464 Female, age 72, unknown 54.7
Periaquaductal grey, lateral
nTPM: 60.7
2140 Male, age 76, both hemispheres 61.8
2272 Male, age 74, both hemispheres 60.8
2053 Male, age 18, unknown 59.4
Pretectal area
nTPM: 56.8
2407 Male, age 75, both hemispheres 60.9
2825 Male, age 18, unknown 60.3
2316 Male, age 76, right hemisphere 58.7
2224 Female, age 72, unknown 58.0
2273 Male, age 74, both hemispheres 58.0
2667 Female, age 75, unknown 58.0
1815 Male, age 53, unknown 55.0
1817 Female, age 42, unknown 54.9
2007 Male, age 72, unknown 54.8
1944 Female, age 72, unknown 53.9
1816 Male, age 51, unknown 52.5
Red nucleus
nTPM: 59.0
2584 Male, age 75, left hemisphere 62.1
2227 Male, age 72, unknown 61.8
2769 Male, age 72, unknown 61.0
1865 Male, age 51, unknown 60.7
1904 Male, age 53, unknown 60.7
2725 Female, age 75, unknown 60.5
1954 Female, age 42, unknown 58.7
2503 Female, age 72, unknown 58.7
2823 Male, age 76, right hemisphere 58.3
1821 Female, age 72, unknown 56.9
2785 Male, age 18, unknown 55.9
2588 Male, age 74, left hemisphere 52.9
Substantia nigra
nTPM: 61.5
2665 Male, age 74, both hemispheres 73.9
2699 Male, age 18, unknown 67.1
2590 Female, age 75, unknown 66.4
2583 Male, age 75, right hemisphere 64.7
1916 Female, age 42, unknown 61.3
1851 Male, age 51, unknown 60.0
1941 Male, age 53, unknown 57.1
2241 Male, age 72, unknown 56.6
1889 Female, age 72, unknown 54.9
2409 Female, age 72, unknown 53.1
Superior colliculus
nTPM: 57.2
2587 Male, age 74, left hemisphere 61.3
1913 Female, age 42, unknown 60.1
1796 Male, age 53, unknown 59.5
2664 Male, age 75, both hemispheres 58.6
1995 Male, age 72, unknown 58.3
1839 Male, age 51, unknown 57.6
2087 Female, age 72, unknown 55.8
2261 Male, age 18, unknown 55.1
1895 Male, age 76, right hemisphere 53.1
2668 Female, age 75, unknown 52.4
Ventral tegmental area
nTPM: 60.6
2021 Male, age 53, unknown 62.4
1915 Female, age 42, unknown 62.2
2223 Female, age 72, unknown 61.3
1942 Male, age 51, unknown 60.7
2218 Male, age 76, both hemispheres 59.8
2410 Female, age 72, unknown 57.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.3
Samples: 139

Max nTPM: 77.1
Min nTPM: 23.0
Std nTPM: 11.4
Median nTPM: 42.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 77.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 75.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 73.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 72.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 67.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 66.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 64.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 63.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 63.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 62.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.7
FF:10158-103A5 76 years, female 51.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.4
Pig sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 21.8
Min nTPM: 11.0
Sample A Female 21.8
Sample B Female 13.0
Sample C Male 13.1
Sample D Male 11.0
Periaqueductal gray
nTPM: 14.6
Samples: 3

Max nTPM: 16.1
Min nTPM: 13.5
Sample B Female 14.2
Sample C Male 16.1
Sample D Male 13.5
Substantia nigra
nTPM: 15.4
Samples: 4

Max nTPM: 17.2
Min nTPM: 13.5
Sample A Female 17.2
Sample B Female 14.0
Sample C Male 17.0
Sample D Male 13.5
Superior colliculi
nTPM: 13.9
Samples: 4

Max nTPM: 15.0
Min nTPM: 12.5
Sample A Female 15.0
Sample B Female 14.6
Sample C Male 12.5
Sample D Male 13.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 41.4
Min nTPM: 38.0
Sample A Male 41.4
Sample B Male 38.0
Sample C Female 38.9
Sample D Female 40.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
70429483 Antisense, RP_050614_01_G07, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.