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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.5 nTPM
HPA:51.5 nTPM
GTEx:170.7 nTPM
FANTOM5:71.6 Scaled Tags Per Million
Pig:112.1 nTPM
Mouse:75.6 nTPM
Allen mouse:12.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.2
2411 Female, age 72, unknown 56.6
2219 Male, age 76, both hemispheres 54.5
1830 Male, age 51, unknown 48.1
2019 Male, age 18, unknown 47.8
1833 Male, age 53, unknown 46.8
2666 Male, age 74, left hemisphere 46.1
2586 Male, age 75, left hemisphere 46.0
1870 Female, age 42, unknown 45.9
2828 Female, age 72, unknown 45.2
1827 Male, age 72, unknown 45.1
Dorsal raphe nucleus
nTPM: 46.6
2047 Male, age 72, unknown 51.9
1828 Male, age 53, unknown 45.7
2750 Male, age 76, both hemispheres 45.3
2016 Female, age 72, unknown 45.2
2298 Female, age 72, unknown 45.1
Inferior colliculus
nTPM: 46.6
1848 Female, age 42, unknown 47.5
2849 Male, age 72, unknown 47.3
2097 Female, age 72, unknown 46.0
1890 Male, age 53, unknown 45.6
Median raphe nucleus
nTPM: 45.4
2220 Male, age 76, midline 45.4
Pedunculopontine tegmental nucleus
nTPM: 47.2
2338 Male, age 61, both hemispheres 51.0
1921 Female, age 85, both hemispheres 45.3
2334 Male, age 80, both hemispheres 45.3
Periaquaductal grey, anterior
nTPM: 46.8
1947 Male, age 18, unknown 49.3
2502 Female, age 75, unknown 46.0
1795 Male, age 51, unknown 45.1
Periaquaductal grey, dorsal
nTPM: 46.6
2850 Male, age 76, both hemispheres 48.3
2464 Female, age 72, unknown 47.5
1840 Male, age 53, unknown 45.5
1831 Male, age 72, unknown 45.1
Periaquaductal grey, lateral
nTPM: 51.5
2053 Male, age 18, unknown 53.4
2140 Male, age 76, both hemispheres 50.8
2272 Male, age 74, both hemispheres 50.3
Pretectal area
nTPM: 45.6
2224 Female, age 72, unknown 46.8
1815 Male, age 53, unknown 46.7
2273 Male, age 74, both hemispheres 46.0
1817 Female, age 42, unknown 45.8
2667 Female, age 75, unknown 45.7
2407 Male, age 75, both hemispheres 45.5
1944 Female, age 72, unknown 45.2
2007 Male, age 72, unknown 45.2
1816 Male, age 51, unknown 45.1
2316 Male, age 76, right hemisphere 45.1
2825 Male, age 18, unknown 45.1
Red nucleus
nTPM: 45.9
1865 Male, age 51, unknown 51.0
2588 Male, age 74, left hemisphere 46.4
2725 Female, age 75, unknown 46.2
1954 Female, age 42, unknown 45.8
1904 Male, age 53, unknown 45.7
2584 Male, age 75, left hemisphere 45.4
1821 Female, age 72, unknown 45.2
2503 Female, age 72, unknown 45.2
2227 Male, age 72, unknown 45.1
2769 Male, age 72, unknown 45.1
2785 Male, age 18, unknown 45.1
2823 Male, age 76, right hemisphere 45.1
Substantia nigra
nTPM: 49.0
2409 Female, age 72, unknown 63.8
2241 Male, age 72, unknown 58.7
1941 Male, age 53, unknown 47.3
1851 Male, age 51, unknown 46.7
1916 Female, age 42, unknown 46.0
2665 Male, age 74, both hemispheres 46.0
2590 Female, age 75, unknown 45.8
2583 Male, age 75, right hemisphere 45.5
1889 Female, age 72, unknown 45.2
2699 Male, age 18, unknown 45.1
Superior colliculus
nTPM: 45.7
1839 Male, age 51, unknown 46.9
2261 Male, age 18, unknown 46.3
2587 Male, age 74, left hemisphere 45.9
2668 Female, age 75, unknown 45.9
1913 Female, age 42, unknown 45.8
1796 Male, age 53, unknown 45.7
2664 Male, age 75, both hemispheres 45.4
1895 Male, age 76, right hemisphere 45.2
1995 Male, age 72, unknown 45.1
2087 Female, age 72, unknown 45.1
Ventral tegmental area
nTPM: 49.8
2410 Female, age 72, unknown 67.5
2021 Male, age 53, unknown 47.5
2223 Female, age 72, unknown 47.2
1915 Female, age 42, unknown 46.1
2218 Male, age 76, both hemispheres 45.4
1942 Male, age 51, unknown 45.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 170.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 170.7
Samples: 139

Max nTPM: 366.9
Min nTPM: 79.8
Std nTPM: 38.3
Median nTPM: 163.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 366.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 282.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 263.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 255.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 248.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 244.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 242.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 242.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 228.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 228.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 227.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.6
FF:10158-103A5 76 years, female 71.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 112.1
Pig sample Sample description nTPM
Midbrain
nTPM: 107.9
Samples: 4

Max nTPM: 172.2
Min nTPM: 68.8
Sample A Female 121.2
Sample B Female 69.2
Sample C Male 172.2
Sample D Male 68.8
Periaqueductal gray
nTPM: 63.4
Samples: 3

Max nTPM: 73.9
Min nTPM: 58.1
Sample B Female 58.1
Sample C Male 73.9
Sample D Male 58.3
Substantia nigra
nTPM: 80.0
Samples: 4

Max nTPM: 97.2
Min nTPM: 69.0
Sample A Female 97.2
Sample B Female 69.7
Sample C Male 84.2
Sample D Male 69.0
Superior colliculi
nTPM: 112.1
Samples: 4

Max nTPM: 182.6
Min nTPM: 83.1
Sample A Female 83.1
Sample B Female 87.4
Sample C Male 182.6
Sample D Male 95.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.6
Samples: 4

Max nTPM: 85.6
Min nTPM: 68.2
Sample A Male 85.6
Sample B Male 74.9
Sample C Female 68.2
Sample D Female 73.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.2
72735 Antisense, RP_040407_01_B07, Mouse strain C57BL/6J (56 days, male) 13.8
67752111 Antisense, RP_040922_01_C04, Mouse strain C57BL/6J (56 days, male) 10.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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