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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.5 nTPM
HPA:60.5 nTPM
GTEx:71.3 nTPM
FANTOM5:157.5 Scaled Tags Per Million
Pig:46.5 nTPM
Mouse:6.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.7
2586 Male, age 75, left hemisphere 64.8
2828 Female, age 72, unknown 62.7
2666 Male, age 74, left hemisphere 59.0
1870 Female, age 42, unknown 57.4
1830 Male, age 51, unknown 54.8
1833 Male, age 53, unknown 54.7
1827 Male, age 72, unknown 52.7
2019 Male, age 18, unknown 52.2
2411 Female, age 72, unknown 51.6
2219 Male, age 76, both hemispheres 47.7
Dorsal raphe nucleus
nTPM: 60.0
2016 Female, age 72, unknown 70.7
1828 Male, age 53, unknown 65.7
2047 Male, age 72, unknown 58.2
2298 Female, age 72, unknown 54.9
2750 Male, age 76, both hemispheres 50.3
Inferior colliculus
nTPM: 57.5
1890 Male, age 53, unknown 62.2
1848 Female, age 42, unknown 56.0
2097 Female, age 72, unknown 56.0
2849 Male, age 72, unknown 55.8
Median raphe nucleus
nTPM: 48.1
2220 Male, age 76, midline 48.1
Pedunculopontine tegmental nucleus
nTPM: 51.1
2334 Male, age 80, both hemispheres 52.6
2338 Male, age 61, both hemispheres 52.0
1921 Female, age 85, both hemispheres 48.7
Periaquaductal grey, anterior
nTPM: 55.1
2502 Female, age 75, unknown 58.6
1947 Male, age 18, unknown 53.6
1795 Male, age 51, unknown 53.0
Periaquaductal grey, dorsal
nTPM: 60.5
2850 Male, age 76, both hemispheres 62.2
1840 Male, age 53, unknown 60.1
1831 Male, age 72, unknown 59.9
2464 Female, age 72, unknown 59.8
Periaquaductal grey, lateral
nTPM: 56.1
2140 Male, age 76, both hemispheres 59.6
2053 Male, age 18, unknown 58.0
2272 Male, age 74, both hemispheres 50.6
Pretectal area
nTPM: 50.6
2825 Male, age 18, unknown 58.8
2407 Male, age 75, both hemispheres 55.3
2273 Male, age 74, both hemispheres 54.5
2224 Female, age 72, unknown 53.4
2316 Male, age 76, right hemisphere 50.4
1815 Male, age 53, unknown 49.2
2667 Female, age 75, unknown 48.5
1944 Female, age 72, unknown 47.8
1817 Female, age 42, unknown 47.4
1816 Male, age 51, unknown 46.4
2007 Male, age 72, unknown 44.8
Red nucleus
nTPM: 59.7
2503 Female, age 72, unknown 69.2
1954 Female, age 42, unknown 63.9
1821 Female, age 72, unknown 63.2
2769 Male, age 72, unknown 62.1
1865 Male, age 51, unknown 61.9
2227 Male, age 72, unknown 60.1
1904 Male, age 53, unknown 59.8
2588 Male, age 74, left hemisphere 56.2
2584 Male, age 75, left hemisphere 56.1
2725 Female, age 75, unknown 54.7
2785 Male, age 18, unknown 54.5
2823 Male, age 76, right hemisphere 54.5
Substantia nigra
nTPM: 58.8
2699 Male, age 18, unknown 69.3
2665 Male, age 74, both hemispheres 62.2
1851 Male, age 51, unknown 61.9
2583 Male, age 75, right hemisphere 61.2
2241 Male, age 72, unknown 60.6
2590 Female, age 75, unknown 59.6
1916 Female, age 42, unknown 54.6
1941 Male, age 53, unknown 53.6
2409 Female, age 72, unknown 53.3
1889 Female, age 72, unknown 51.3
Superior colliculus
nTPM: 55.9
1995 Male, age 72, unknown 65.1
2664 Male, age 75, both hemispheres 62.1
1913 Female, age 42, unknown 61.3
2668 Female, age 75, unknown 57.5
1839 Male, age 51, unknown 56.9
2587 Male, age 74, left hemisphere 56.1
2087 Female, age 72, unknown 51.4
1796 Male, age 53, unknown 51.1
1895 Male, age 76, right hemisphere 50.6
2261 Male, age 18, unknown 46.8
Ventral tegmental area
nTPM: 54.6
1915 Female, age 42, unknown 57.9
2021 Male, age 53, unknown 56.1
2223 Female, age 72, unknown 55.7
1942 Male, age 51, unknown 55.5
2410 Female, age 72, unknown 51.8
2218 Male, age 76, both hemispheres 50.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.3
Samples: 139

Max nTPM: 155.0
Min nTPM: 22.6
Std nTPM: 27.8
Median nTPM: 65.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 155.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 145.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 143.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 136.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 129.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 126.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 125.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 120.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 119.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 119.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 116.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 157.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 157.5
FF:10158-103A5 76 years, female 157.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.5
Pig sample Sample description nTPM
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 33.0
Sample A Female 33.8
Sample B Female 41.6
Sample C Male 34.3
Sample D Male 33.0
Periaqueductal gray
nTPM: 46.5
Samples: 3

Max nTPM: 48.4
Min nTPM: 45.2
Sample B Female 45.9
Sample C Male 48.4
Sample D Male 45.2
Substantia nigra
nTPM: 42.1
Samples: 4

Max nTPM: 60.3
Min nTPM: 33.8
Sample A Female 35.6
Sample B Female 60.3
Sample C Male 33.8
Sample D Male 38.5
Superior colliculi
nTPM: 41.4
Samples: 4

Max nTPM: 53.1
Min nTPM: 31.2
Sample A Female 44.2
Sample B Female 53.1
Sample C Male 31.2
Sample D Male 37.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.4
Sample A Male 6.4
Sample B Male 6.1
Sample C Female 4.4
Sample D Female 8.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.