ABOUTMENU
HELP
NEWS
MBNL2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.0 nTPM
HPA:52.0 nTPM
GTEx:37.6 nTPM
FANTOM5:338.1 Scaled Tags Per Million
Pig:93.9 nTPM
Mouse:82.4 nTPM
Allen mouse:13.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.0
2846 Female, age 79, unknown 46.0
2288 Male, age 75, left hemisphere 44.6
2290 Female, age 72, unknown 43.9
1854 Male, age 80, left hemisphere 40.2
2481 Female, age 94, left hemisphere 39.4
1857 Female, age 85, left hemisphere 37.0
1781 Male, age 74, unknown 35.4
2289 Male, age 61, right hemisphere 33.3
Claustrum
nTPM: 30.7
1956 Male, age 74, unknown 45.3
2196 Female, age 79, unknown 37.1
2392 Female, age 94, both hemispheres 36.5
2292 Female, age 85, both hemispheres 34.4
2491 Male, age 75, both hemispheres 30.1
2198 Male, age 80, both hemispheres 26.9
2284 Female, age 91, both hemispheres 25.7
2568 Male, age 61, both hemispheres 20.4
2645 Female, age 72, unknown 19.9
Globus pallidus, externus
nTPM: 43.1
2772 Female, age 79, unknown 50.2
1996 Male, age 80, right hemisphere 49.5
2395 Male, age 75, both hemispheres 42.1
2646 Male, age 61, right hemisphere 39.8
2567 Female, age 72, unknown 33.7
Globus pallidus, internus
nTPM: 52.0
2287 Male, age 75, right hemisphere 72.4
2778 Female, age 91, both hemispheres 61.4
2111 Female, age 85, right hemisphere 60.7
1818 Male, age 74, unknown 45.0
2483 Female, age 94, right hemisphere 43.9
2566 Female, age 72, unknown 41.3
2037 Male, age 80, right hemisphere 39.6
Nucleus accumbens
nTPM: 42.3
2391 Female, age 94, left hemisphere 52.4
2698 Female, age 72, unknown 51.4
1783 Male, age 74, unknown 45.9
2286 Male, age 75, left hemisphere 44.2
1806 Female, age 85, left hemisphere 40.7
1856 Female, age 91, right hemisphere 37.3
2824 Male, age 61, right hemisphere 36.6
2732 Male, age 80, right hemisphere 30.1
Nucleus basalis of Meynert
nTPM: 36.5
2393 Male, age 80, right hemisphere 39.1
2569 Male, age 61, both hemispheres 37.4
2821 Male, age 75, both hemispheres 36.7
2484 Female, age 94, left hemisphere 32.8
Nucleus of the diagonal band
nTPM: 29.3
1812 Female, age 91, both hemispheres 34.8
2195 Female, age 85, both hemispheres 31.3
2029 Male, age 61, right hemisphere 29.9
2775 Male, age 80, right hemisphere 27.8
1979 Male, age 74, unknown 22.4
Olfactory tubercle
nTPM: 30.6
1846 Male, age 80, right hemisphere 34.1
2856 Male, age 75, right hemisphere 32.2
2487 Female, age 94, left hemisphere 28.7
1998 Female, age 91, both hemispheres 27.5
Putamen
nTPM: 39.2
1829 Male, age 74, unknown 46.2
1937 Female, age 91, right hemisphere 42.3
2466 Female, age 79, unknown 40.8
1838 Male, age 80, right hemisphere 40.5
2482 Female, age 94, left hemisphere 36.1
2647 Male, age 75, left hemisphere 35.2
2489 Female, age 72, unknown 33.0
Septal nuclei
nTPM: 29.8
2629 Female, age 94, right hemisphere 43.0
2031 Female, age 72, unknown 35.5
2394 Male, age 61, left hemisphere 29.8
1960 Male, age 74, unknown 29.1
2009 Female, age 91, both hemispheres 27.4
2199 Male, age 80, right hemisphere 22.7
2059 Female, age 85, both hemispheres 20.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.5
Samples: 246

Max nTPM: 93.0
Min nTPM: 16.6
Std nTPM: 10.0
Median nTPM: 35.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 93.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 66.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 65.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 64.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 63.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 62.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 57.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 56.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 54.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 54.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.6
Samples: 246

Max nTPM: 80.6
Min nTPM: 18.6
Std nTPM: 9.5
Median nTPM: 38.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 80.6
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 65.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 64.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 63.7
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 59.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 58.1
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 58.0
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 57.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 56.6
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 54.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 53.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 37.4
Samples: 205

Max nTPM: 74.0
Min nTPM: 14.6
Std nTPM: 9.5
Median nTPM: 37.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 74.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 72.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 67.7
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 60.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 59.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 57.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 56.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 56.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 53.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 53.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 52.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 338.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 247.6
FF:10164-103B2 76 years, female 247.6
Globus pallidus
Scaled Tags Per Million: 267.1
FF:10161-103A8 76 years, female 308.6
FF:10175-103C4 60 years, female 225.7
Nucleus accumbens
Scaled Tags Per Million: 338.1
FF:10037-101F1 23-56 years, mixed 338.1
Putamen
Scaled Tags Per Million: 255.4
FF:10176-103C5 60 years, female 255.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 93.9
Pig sample Sample description nTPM
Caudate
nTPM: 69.3
Samples: 4

Max nTPM: 76.0
Min nTPM: 65.3
Sample A Female 68.1
Sample B Female 67.9
Sample C Male 76.0
Sample D Male 65.3
Putamen
nTPM: 93.9
Samples: 4

Max nTPM: 119.3
Min nTPM: 80.1
Sample A Female 80.1
Sample B Female 80.9
Sample C Male 119.3
Sample D Male 95.1
Septum
nTPM: 61.4
Samples: 4

Max nTPM: 66.1
Min nTPM: 53.8
Sample A Female 66.1
Sample B Female 62.4
Sample C Male 53.8
Sample D Male 63.3
Ventral pallidum
nTPM: 73.7
Samples: 4

Max nTPM: 86.4
Min nTPM: 66.0
Sample A Female 66.4
Sample B Female 86.4
Sample C Male 66.0
Sample D Male 76.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 82.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 82.4
Samples: 4

Max nTPM: 89.8
Min nTPM: 73.9
Sample A Male 89.8
Sample B Male 88.7
Sample C Female 77.1
Sample D Female 73.9
Septum
nTPM: 56.1
Samples: 4

Max nTPM: 59.3
Min nTPM: 49.2
Sample A Male 59.3
Sample B Male 49.2
Sample C Female 57.3
Sample D Female 58.4
Ventral forebrain
nTPM: 71.2
Samples: 4

Max nTPM: 75.0
Min nTPM: 63.0
Sample A Male 73.0
Sample B Male 75.0
Sample C Female 63.0
Sample D Female 73.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.5
71022744 Antisense, RP_050719_01_E04, Mouse strain C57BL/6J (56 days, male) 13.5
Pallidum
Expression energy: 8.6
71022744 Antisense, RP_050719_01_E04, Mouse strain C57BL/6J (56 days, male) 8.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.