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RUSF1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA:16.0 nTPM
GTEx:17.6 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Pig:13.1 nTPM
Mouse:12.3 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.5
2586 Male, age 75, left hemisphere 16.7
1827 Male, age 72, unknown 16.5
2411 Female, age 72, unknown 16.2
2828 Female, age 72, unknown 15.8
1870 Female, age 42, unknown 14.6
2666 Male, age 74, left hemisphere 14.0
1833 Male, age 53, unknown 13.9
1830 Male, age 51, unknown 13.1
2219 Male, age 76, both hemispheres 13.1
2019 Male, age 18, unknown 10.9
Dorsal raphe nucleus
nTPM: 14.4
2298 Female, age 72, unknown 16.6
2750 Male, age 76, both hemispheres 15.0
2047 Male, age 72, unknown 13.8
1828 Male, age 53, unknown 13.4
2016 Female, age 72, unknown 12.9
Inferior colliculus
nTPM: 14.0
2849 Male, age 72, unknown 15.8
1848 Female, age 42, unknown 14.8
2097 Female, age 72, unknown 13.9
1890 Male, age 53, unknown 11.5
Median raphe nucleus
nTPM: 16.0
2220 Male, age 76, midline 16.0
Pedunculopontine tegmental nucleus
nTPM: 15.0
1921 Female, age 85, both hemispheres 15.6
2334 Male, age 80, both hemispheres 15.6
2338 Male, age 61, both hemispheres 13.8
Periaquaductal grey, anterior
nTPM: 15.8
1947 Male, age 18, unknown 16.6
1795 Male, age 51, unknown 15.9
2502 Female, age 75, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 14.0
1840 Male, age 53, unknown 17.1
2850 Male, age 76, both hemispheres 13.3
2464 Female, age 72, unknown 13.2
1831 Male, age 72, unknown 12.4
Periaquaductal grey, lateral
nTPM: 13.2
2053 Male, age 18, unknown 13.7
2140 Male, age 76, both hemispheres 13.5
2272 Male, age 74, both hemispheres 12.4
Pretectal area
nTPM: 14.8
2667 Female, age 75, unknown 17.1
2825 Male, age 18, unknown 17.0
2224 Female, age 72, unknown 16.4
1816 Male, age 51, unknown 14.7
1817 Female, age 42, unknown 14.7
1815 Male, age 53, unknown 14.6
1944 Female, age 72, unknown 14.4
2007 Male, age 72, unknown 13.9
2316 Male, age 76, right hemisphere 13.5
2407 Male, age 75, both hemispheres 13.4
2273 Male, age 74, both hemispheres 12.9
Red nucleus
nTPM: 13.0
2584 Male, age 75, left hemisphere 14.7
1821 Female, age 72, unknown 14.1
2769 Male, age 72, unknown 14.1
2725 Female, age 75, unknown 13.8
1954 Female, age 42, unknown 13.2
2227 Male, age 72, unknown 13.2
1904 Male, age 53, unknown 13.1
2588 Male, age 74, left hemisphere 13.0
1865 Male, age 51, unknown 12.3
2503 Female, age 72, unknown 12.0
2785 Male, age 18, unknown 12.0
2823 Male, age 76, right hemisphere 11.1
Substantia nigra
nTPM: 14.5
1916 Female, age 42, unknown 18.5
1851 Male, age 51, unknown 15.9
2665 Male, age 74, both hemispheres 14.9
2699 Male, age 18, unknown 14.8
2583 Male, age 75, right hemisphere 14.2
1889 Female, age 72, unknown 13.9
2590 Female, age 75, unknown 13.8
2241 Male, age 72, unknown 13.5
1941 Male, age 53, unknown 13.2
2409 Female, age 72, unknown 12.2
Superior colliculus
nTPM: 13.9
1796 Male, age 53, unknown 16.5
2261 Male, age 18, unknown 15.3
2087 Female, age 72, unknown 14.5
1895 Male, age 76, right hemisphere 14.1
1839 Male, age 51, unknown 14.0
2664 Male, age 75, both hemispheres 14.0
2587 Male, age 74, left hemisphere 12.8
1995 Male, age 72, unknown 12.6
1913 Female, age 42, unknown 12.5
2668 Female, age 75, unknown 12.3
Ventral tegmental area
nTPM: 15.3
1915 Female, age 42, unknown 16.9
1942 Male, age 51, unknown 15.8
2410 Female, age 72, unknown 15.8
2021 Male, age 53, unknown 15.1
2218 Male, age 76, both hemispheres 15.1
2223 Female, age 72, unknown 13.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 139

Max nTPM: 33.7
Min nTPM: 8.9
Std nTPM: 5.5
Median nTPM: 17.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 32.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 32.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 29.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 29.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 29.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 29.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 27.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 26.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 26.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.2
FF:10158-103A5 76 years, female 26.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.1
Pig sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 17.3
Min nTPM: 10.4
Sample A Female 17.3
Sample B Female 11.0
Sample C Male 13.8
Sample D Male 10.4
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 12.0
Min nTPM: 9.9
Sample B Female 10.1
Sample C Male 12.0
Sample D Male 9.9
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 14.5
Min nTPM: 9.3
Sample A Female 13.6
Sample B Female 9.3
Sample C Male 14.2
Sample D Male 14.5
Superior colliculi
nTPM: 12.9
Samples: 4

Max nTPM: 14.6
Min nTPM: 9.4
Sample A Female 14.6
Sample B Female 9.4
Sample C Male 14.2
Sample D Male 13.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 13.0
Min nTPM: 11.9
Sample A Male 12.1
Sample B Male 12.3
Sample C Female 11.9
Sample D Female 13.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70445616 Antisense, RP_050614_04_C01, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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