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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:36.5 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:8.0 nTPM
Allen mouse:4.0 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB009208
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.9
1781 Male, age 74, unknown 32.7
2481 Female, age 94, left hemisphere 31.5
2289 Male, age 61, right hemisphere 31.1
2290 Female, age 72, unknown 29.4
2288 Male, age 75, left hemisphere 29.2
1854 Male, age 80, left hemisphere 29.1
2846 Female, age 79, unknown 28.7
1857 Female, age 85, left hemisphere 27.2
Claustrum
nTPM: 32.5
2568 Male, age 61, both hemispheres 34.3
2292 Female, age 85, both hemispheres 33.4
2645 Female, age 72, unknown 33.3
2491 Male, age 75, both hemispheres 32.8
2198 Male, age 80, both hemispheres 32.5
2284 Female, age 91, both hemispheres 32.2
1956 Male, age 74, unknown 31.4
2196 Female, age 79, unknown 31.3
2392 Female, age 94, both hemispheres 31.3
Globus pallidus, externus
nTPM: 37.1
2567 Female, age 72, unknown 40.5
2646 Male, age 61, right hemisphere 39.8
2772 Female, age 79, unknown 36.8
1996 Male, age 80, right hemisphere 35.5
2395 Male, age 75, both hemispheres 32.8
Globus pallidus, internus
nTPM: 35.2
2483 Female, age 94, right hemisphere 37.9
2778 Female, age 91, both hemispheres 36.9
2566 Female, age 72, unknown 35.9
2287 Male, age 75, right hemisphere 34.5
2111 Female, age 85, right hemisphere 34.3
1818 Male, age 74, unknown 34.1
2037 Male, age 80, right hemisphere 32.8
Nucleus accumbens
nTPM: 30.0
2732 Male, age 80, right hemisphere 32.6
2391 Female, age 94, left hemisphere 30.8
2698 Female, age 72, unknown 30.8
2286 Male, age 75, left hemisphere 30.3
1806 Female, age 85, left hemisphere 30.1
2824 Male, age 61, right hemisphere 29.6
1783 Male, age 74, unknown 29.2
1856 Female, age 91, right hemisphere 27.1
Nucleus basalis of Meynert
nTPM: 32.4
2569 Male, age 61, both hemispheres 39.6
2484 Female, age 94, left hemisphere 31.3
2821 Male, age 75, both hemispheres 30.3
2393 Male, age 80, right hemisphere 28.3
Nucleus of the diagonal band
nTPM: 29.1
2029 Male, age 61, right hemisphere 30.0
2775 Male, age 80, right hemisphere 30.0
2195 Female, age 85, both hemispheres 29.1
1812 Female, age 91, both hemispheres 28.7
1979 Male, age 74, unknown 27.7
Olfactory tubercle
nTPM: 30.0
1998 Female, age 91, both hemispheres 31.2
2856 Male, age 75, right hemisphere 29.9
2487 Female, age 94, left hemisphere 29.8
1846 Male, age 80, right hemisphere 29.2
Putamen
nTPM: 29.8
2647 Male, age 75, left hemisphere 31.8
2482 Female, age 94, left hemisphere 30.3
2489 Female, age 72, unknown 30.0
2466 Female, age 79, unknown 29.9
1829 Male, age 74, unknown 29.7
1937 Female, age 91, right hemisphere 28.5
1838 Male, age 80, right hemisphere 28.1
Septal nuclei
nTPM: 29.8
1960 Male, age 74, unknown 31.1
2394 Male, age 61, left hemisphere 31.0
2629 Female, age 94, right hemisphere 30.3
2031 Female, age 72, unknown 29.5
2059 Female, age 85, both hemispheres 29.5
2009 Female, age 91, both hemispheres 28.8
2199 Male, age 80, right hemisphere 28.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.5
Samples: 246

Max nTPM: 75.9
Min nTPM: 6.1
Std nTPM: 10.5
Median nTPM: 23.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 75.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 75.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 60.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 55.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 54.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 53.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 52.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 50.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 48.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 47.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 45.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.9
Samples: 246

Max nTPM: 82.2
Min nTPM: 9.1
Std nTPM: 12.4
Median nTPM: 20.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 82.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 78.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 74.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 68.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 66.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 65.7
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 58.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 56.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 53.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 53.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 51.8
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Brain - Putamen (basal ganglia)
Average nTPM: 36.5
Samples: 205

Max nTPM: 141.2
Min nTPM: 8.1
Std nTPM: 18.0
Median nTPM: 32.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 141.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 96.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 94.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 93.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 81.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 78.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 76.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 75.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 72.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 72.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 71.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.5
FF:10164-103B2 76 years, female 17.5
Globus pallidus
Scaled Tags Per Million: 30.0
FF:10161-103A8 76 years, female 39.5
FF:10175-103C4 60 years, female 20.5
Nucleus accumbens
Scaled Tags Per Million: 13.2
FF:10037-101F1 23-56 years, mixed 13.2
Putamen
Scaled Tags Per Million: 14.5
FF:10176-103C5 60 years, female 14.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Caudate
nTPM: 3.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 3.7
Sample C Male 3.6
Sample D Male 2.9
Putamen
nTPM: 3.7
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.3
Sample A Female 4.1
Sample B Female 3.3
Sample C Male 3.3
Sample D Male 4.0
Septum
nTPM: 3.8
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.0
Sample A Female 3.7
Sample B Female 3.6
Sample C Male 4.7
Sample D Male 3.0
Ventral pallidum
nTPM: 3.5
Samples: 4

Max nTPM: 4.9
Min nTPM: 2.6
Sample A Female 2.6
Sample B Female 3.5
Sample C Male 4.9
Sample D Male 3.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.9
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.1
Sample A Male 7.0
Sample B Male 7.1
Sample C Female 7.4
Sample D Female 6.1
Septum
nTPM: 7.9
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.3
Sample A Male 9.2
Sample B Male 6.3
Sample C Female 7.7
Sample D Female 8.3
Ventral forebrain
nTPM: 8.0
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.5
Sample A Male 8.5
Sample B Male 7.5
Sample C Female 7.5
Sample D Female 8.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
67767468 Antisense, RP_040916_02_B08, Mouse strain C57BL/6J (56 days, male) 5.0
68845251 Antisense, RP_050224_01_D08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 4.0
67767468 Antisense, RP_040916_02_B08, Mouse strain C57BL/6J (56 days, male) 7.9
68845251 Antisense, RP_050224_01_D08, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.