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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.1 nTPM
HPA:62.1 nTPM
GTEx:72.6 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:39.7 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.3
2586 Male, age 75, left hemisphere 66.7
2219 Male, age 76, both hemispheres 59.8
2411 Female, age 72, unknown 58.9
1827 Male, age 72, unknown 57.8
2019 Male, age 18, unknown 57.2
2828 Female, age 72, unknown 56.6
2666 Male, age 74, left hemisphere 52.9
1870 Female, age 42, unknown 51.5
1830 Male, age 51, unknown 51.0
1833 Male, age 53, unknown 50.4
Dorsal raphe nucleus
nTPM: 53.3
2750 Male, age 76, both hemispheres 57.1
2298 Female, age 72, unknown 56.6
2047 Male, age 72, unknown 55.8
1828 Male, age 53, unknown 52.9
2016 Female, age 72, unknown 43.9
Inferior colliculus
nTPM: 49.8
1890 Male, age 53, unknown 51.7
1848 Female, age 42, unknown 49.4
2849 Male, age 72, unknown 49.3
2097 Female, age 72, unknown 48.7
Median raphe nucleus
nTPM: 60.9
2220 Male, age 76, midline 60.9
Pedunculopontine tegmental nucleus
nTPM: 56.2
1921 Female, age 85, both hemispheres 60.4
2334 Male, age 80, both hemispheres 57.3
2338 Male, age 61, both hemispheres 50.9
Periaquaductal grey, anterior
nTPM: 59.7
1795 Male, age 51, unknown 63.6
2502 Female, age 75, unknown 58.9
1947 Male, age 18, unknown 56.7
Periaquaductal grey, dorsal
nTPM: 47.8
1831 Male, age 72, unknown 51.5
1840 Male, age 53, unknown 49.6
2464 Female, age 72, unknown 48.8
2850 Male, age 76, both hemispheres 41.3
Periaquaductal grey, lateral
nTPM: 48.3
2053 Male, age 18, unknown 50.8
2272 Male, age 74, both hemispheres 48.7
2140 Male, age 76, both hemispheres 45.3
Pretectal area
nTPM: 55.8
1816 Male, age 51, unknown 63.5
1944 Female, age 72, unknown 63.1
2007 Male, age 72, unknown 62.3
2667 Female, age 75, unknown 59.8
1815 Male, age 53, unknown 58.7
1817 Female, age 42, unknown 57.9
2407 Male, age 75, both hemispheres 53.0
2224 Female, age 72, unknown 51.3
2825 Male, age 18, unknown 50.0
2273 Male, age 74, both hemispheres 47.7
2316 Male, age 76, right hemisphere 47.0
Red nucleus
nTPM: 55.7
2584 Male, age 75, left hemisphere 65.0
2588 Male, age 74, left hemisphere 63.3
2785 Male, age 18, unknown 61.2
2503 Female, age 72, unknown 57.3
1904 Male, age 53, unknown 55.1
2769 Male, age 72, unknown 54.3
2227 Male, age 72, unknown 53.7
1821 Female, age 72, unknown 53.2
2823 Male, age 76, right hemisphere 53.1
2725 Female, age 75, unknown 50.9
1865 Male, age 51, unknown 50.8
1954 Female, age 42, unknown 50.1
Substantia nigra
nTPM: 62.1
1916 Female, age 42, unknown 78.5
2665 Male, age 74, both hemispheres 67.1
1851 Male, age 51, unknown 64.2
1941 Male, age 53, unknown 63.9
1889 Female, age 72, unknown 59.9
2409 Female, age 72, unknown 59.6
2699 Male, age 18, unknown 59.2
2583 Male, age 75, right hemisphere 58.5
2590 Female, age 75, unknown 56.2
2241 Male, age 72, unknown 54.1
Superior colliculus
nTPM: 56.0
2087 Female, age 72, unknown 63.6
2668 Female, age 75, unknown 62.6
2664 Male, age 75, both hemispheres 61.5
1796 Male, age 53, unknown 59.3
2261 Male, age 18, unknown 57.1
1913 Female, age 42, unknown 52.6
1839 Male, age 51, unknown 51.7
1895 Male, age 76, right hemisphere 51.2
1995 Male, age 72, unknown 51.1
2587 Male, age 74, left hemisphere 49.3
Ventral tegmental area
nTPM: 59.7
2410 Female, age 72, unknown 65.7
2218 Male, age 76, both hemispheres 64.3
1942 Male, age 51, unknown 60.9
1915 Female, age 42, unknown 60.5
2223 Female, age 72, unknown 53.9
2021 Male, age 53, unknown 52.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.6
Samples: 139

Max nTPM: 151.8
Min nTPM: 39.1
Std nTPM: 20.9
Median nTPM: 69.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 151.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 141.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 122.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 121.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 118.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 114.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 113.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 107.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 105.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 104.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 104.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.1
Pig sample Sample description nTPM
Midbrain
nTPM: 18.1
Samples: 4

Max nTPM: 27.1
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 16.0
Sample C Male 27.1
Sample D Male 18.1
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 17.0
Min nTPM: 11.9
Sample B Female 16.9
Sample C Male 17.0
Sample D Male 11.9
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 22.9
Min nTPM: 11.5
Sample A Female 20.7
Sample B Female 16.4
Sample C Male 22.9
Sample D Male 11.5
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 21.5
Min nTPM: 16.7
Sample A Female 16.7
Sample B Female 16.9
Sample C Male 21.5
Sample D Male 17.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.8
Samples: 4

Max nTPM: 41.8
Min nTPM: 38.5
Sample A Male 38.5
Sample B Male 39.1
Sample C Female 39.6
Sample D Female 41.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
69095968 Antisense, RP_050324_02_F05, Mouse strain C57BL/6J (56 days, male) 7.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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