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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:59.4 nTPM
HPA:59.4 nTPM
GTEx:59.0 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:41.0 nTPM
Allen mouse:8.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041745
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 59.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.9
2289 Male, age 61, right hemisphere 52.5
1781 Male, age 74, unknown 51.6
1854 Male, age 80, left hemisphere 48.5
2846 Female, age 79, unknown 47.0
2290 Female, age 72, unknown 46.5
2288 Male, age 75, left hemisphere 45.8
2481 Female, age 94, left hemisphere 43.8
1857 Female, age 85, left hemisphere 39.8
Claustrum
nTPM: 58.5
2645 Female, age 72, unknown 68.6
2491 Male, age 75, both hemispheres 64.7
2568 Male, age 61, both hemispheres 62.8
2284 Female, age 91, both hemispheres 61.5
2198 Male, age 80, both hemispheres 56.3
2292 Female, age 85, both hemispheres 54.5
2392 Female, age 94, both hemispheres 54.5
1956 Male, age 74, unknown 54.3
2196 Female, age 79, unknown 49.7
Globus pallidus, externus
nTPM: 54.2
2567 Female, age 72, unknown 63.6
2646 Male, age 61, right hemisphere 57.1
2772 Female, age 79, unknown 56.0
1996 Male, age 80, right hemisphere 47.4
2395 Male, age 75, both hemispheres 46.8
Globus pallidus, internus
nTPM: 51.2
2566 Female, age 72, unknown 59.9
2111 Female, age 85, right hemisphere 55.9
2778 Female, age 91, both hemispheres 51.5
2483 Female, age 94, right hemisphere 49.8
2037 Male, age 80, right hemisphere 49.7
1818 Male, age 74, unknown 46.5
2287 Male, age 75, right hemisphere 45.2
Nucleus accumbens
nTPM: 48.6
2824 Male, age 61, right hemisphere 56.1
1783 Male, age 74, unknown 51.3
2286 Male, age 75, left hemisphere 48.7
2732 Male, age 80, right hemisphere 48.2
2391 Female, age 94, left hemisphere 48.1
1856 Female, age 91, right hemisphere 47.6
1806 Female, age 85, left hemisphere 46.2
2698 Female, age 72, unknown 42.9
Nucleus basalis of Meynert
nTPM: 48.7
2484 Female, age 94, left hemisphere 51.9
2569 Male, age 61, both hemispheres 51.5
2821 Male, age 75, both hemispheres 47.0
2393 Male, age 80, right hemisphere 44.4
Nucleus of the diagonal band
nTPM: 56.1
2029 Male, age 61, right hemisphere 65.9
2775 Male, age 80, right hemisphere 57.3
2195 Female, age 85, both hemispheres 57.1
1812 Female, age 91, both hemispheres 52.0
1979 Male, age 74, unknown 48.1
Olfactory tubercle
nTPM: 59.4
2487 Female, age 94, left hemisphere 66.2
1998 Female, age 91, both hemispheres 64.4
2856 Male, age 75, right hemisphere 56.8
1846 Male, age 80, right hemisphere 50.3
Putamen
nTPM: 49.3
2647 Male, age 75, left hemisphere 59.1
2489 Female, age 72, unknown 50.5
2466 Female, age 79, unknown 49.2
1937 Female, age 91, right hemisphere 48.6
2482 Female, age 94, left hemisphere 47.5
1829 Male, age 74, unknown 45.0
1838 Male, age 80, right hemisphere 45.0
Septal nuclei
nTPM: 54.8
1960 Male, age 74, unknown 60.1
2059 Female, age 85, both hemispheres 58.7
2394 Male, age 61, left hemisphere 56.8
2009 Female, age 91, both hemispheres 55.8
2031 Female, age 72, unknown 54.0
2629 Female, age 94, right hemisphere 50.0
2199 Male, age 80, right hemisphere 48.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 59.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.7
Samples: 246

Max nTPM: 91.1
Min nTPM: 36.8
Std nTPM: 8.8
Median nTPM: 58.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 91.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 85.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 84.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 82.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 81.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 80.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 79.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 77.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 76.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 76.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 75.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.0
Samples: 246

Max nTPM: 103.7
Min nTPM: 35.9
Std nTPM: 8.5
Median nTPM: 58.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 103.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 80.5
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 78.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 77.8
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 76.1
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 75.1
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 74.9
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 73.9
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 73.6
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 73.4
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 73.2
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Brain - Putamen (basal ganglia)
Average nTPM: 58.7
Samples: 205

Max nTPM: 80.2
Min nTPM: 37.0
Std nTPM: 8.6
Median nTPM: 59.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 80.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 79.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 77.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 77.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 75.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 75.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 74.8
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 74.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 74.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 73.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 73.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.8
FF:10164-103B2 76 years, female 22.8
Globus pallidus
Scaled Tags Per Million: 20.4
FF:10175-103C4 60 years, female 22.1
FF:10161-103A8 76 years, female 18.7
Nucleus accumbens
Scaled Tags Per Million: 20.4
FF:10037-101F1 23-56 years, mixed 20.4
Putamen
Scaled Tags Per Million: 16.2
FF:10176-103C5 60 years, female 16.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Caudate
nTPM: 21.3
Samples: 4

Max nTPM: 24.3
Min nTPM: 18.1
Sample A Female 18.1
Sample B Female 24.3
Sample C Male 23.8
Sample D Male 18.8
Putamen
nTPM: 18.5
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.1
Sample A Female 16.1
Sample B Female 20.0
Sample C Male 19.0
Sample D Male 18.9
Septum
nTPM: 18.3
Samples: 4

Max nTPM: 21.0
Min nTPM: 14.4
Sample A Female 19.2
Sample B Female 21.0
Sample C Male 18.4
Sample D Male 14.4
Ventral pallidum
nTPM: 20.7
Samples: 4

Max nTPM: 27.4
Min nTPM: 16.5
Sample A Female 18.3
Sample B Female 20.5
Sample C Male 27.4
Sample D Male 16.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 41.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.6
Samples: 4

Max nTPM: 41.2
Min nTPM: 36.8
Sample A Male 36.8
Sample B Male 39.8
Sample C Female 40.5
Sample D Female 41.2
Septum
nTPM: 38.6
Samples: 4

Max nTPM: 39.9
Min nTPM: 37.0
Sample A Male 38.5
Sample B Male 37.0
Sample C Female 39.9
Sample D Female 39.1
Ventral forebrain
nTPM: 41.0
Samples: 4

Max nTPM: 43.4
Min nTPM: 38.9
Sample A Male 40.6
Sample B Male 43.4
Sample C Female 41.0
Sample D Female 38.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.0
69095968 Antisense, RP_050324_02_F05, Mouse strain C57BL/6J (56 days, male) 8.0
Pallidum
Expression energy: 6.7
69095968 Antisense, RP_050324_02_F05, Mouse strain C57BL/6J (56 days, male) 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.