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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.6 nTPM
HPA:41.6 nTPM
GTEx:23.6 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:31.7 nTPM
Mouse:24.0 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.6
Sample id Sample description nTPM
Hippocampus
nTPM: 41.6
1855 Male, age 76, left hemisphere 49.7
2529 Female, age 94, left hemisphere 45.6
2148 Female, age 91, left hemisphere 45.3
1898 Male, age 80, left hemisphere 38.1
2621 Female, age 67, right hemisphere 35.5
1911 Female, age 85, right hemisphere 35.4
Dentate gyrus
nTPM: 37.7
2010 Male, age 76, both hemispheres 42.8
2246 Female, age 85, both hemispheres 39.0
2530 Female, age 94, left hemisphere 38.7
2528 Male, age 74, both hemispheres 37.9
2531 Female, age 67, both hemispheres 36.2
1927 Female, age 91, both hemispheres 31.4
Entorhinal gyrus
nTPM: 36.7
2117 Female, age 91, right hemisphere 50.1
2686 Male, age 75, right hemisphere 43.3
1787 Male, age 76, left hemisphere 33.8
1938 Female, age 85, left hemisphere 33.1
2764 Male, age 80, right hemisphere 31.2
2613 Female, age 94, left hemisphere 28.4
Hippocampus, CA1
nTPM: 34.8
2527 Male, age 74, both hemispheres 42.6
2082 Female, age 91, right hemisphere 37.6
2045 Male, age 76, both hemispheres 36.7
1873 Female, age 85, both hemispheres 32.5
2749 Male, age 80, left hemisphere 24.5
Hippocampus, CA2
nTPM: 37.5
1940 Female, age 85, left hemisphere 44.6
2437 Female, age 94, left hemisphere 39.8
2113 Female, age 91, right hemisphere 39.3
2249 Male, age 74, both hemispheres 37.7
1963 Male, age 80, left hemisphere 32.5
1892 Male, age 76, both hemispheres 30.9
Hippocampus, CA3
nTPM: 35.9
2861 Female, age 67, both hemispheres 46.8
2436 Male, age 74, both hemispheres 37.6
1867 Male, age 76, both hemispheres 36.7
2620 Female, age 94, left hemisphere 33.5
1891 Female, age 85, both hemispheres 33.1
2137 Male, age 80, left hemisphere 27.7
Parahippocampal cortex
nTPM: 33.6
2692 Male, age 74, both hemispheres 43.0
2622 Female, age 67, right hemisphere 38.6
2250 Female, age 67, right hemisphere 36.2
1933 Female, age 85, both hemispheres 35.2
2245 Female, age 91, both hemispheres 33.8
1990 Female, age 91, right hemisphere 30.6
2018 Male, age 76, both hemispheres 30.3
2532 Female, age 72, left hemisphere 29.9
2693 Female, age 94, both hemispheres 29.2
1850 Male, age 80, both hemispheres 29.1
Perirhinal gyrus
nTPM: 30.7
1841 Female, age 85, right hemisphere 34.4
1794 Male, age 80, right hemisphere 33.4
1847 Female, age 91, left hemisphere 30.0
2521 Female, age 94, right hemisphere 30.0
2848 Male, age 76, right hemisphere 25.8
Subiculum
nTPM: 38.2
2729 Female, age 91, right hemisphere 47.1
2619 Male, age 74, both hemispheres 41.3
2438 Female, age 94, left hemisphere 40.3
2042 Male, age 76, both hemispheres 38.4
1977 Female, age 85, both hemispheres 31.5
1901 Male, age 80, both hemispheres 30.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.6
Samples: 197

Max nTPM: 85.9
Min nTPM: 5.9
Std nTPM: 12.9
Median nTPM: 21.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 85.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 81.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 65.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 63.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 59.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 54.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 54.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 52.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 52.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 52.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 51.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 43.7
FF:10153-102I9 76 years, female 58.1
FF:10169-103B7 60 years, female 29.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.1
Samples: 4

Max nTPM: 24.2
Min nTPM: 15.7
Sample A Female 19.4
Sample B Female 24.2
Sample C Male 17.1
Sample D Male 15.7
Entorhinal cortex
nTPM: 31.7
Samples: 4

Max nTPM: 34.2
Min nTPM: 27.9
Sample A Female 34.2
Sample B Female 33.0
Sample C Male 31.7
Sample D Male 27.9
Subiculum
nTPM: 21.1
Samples: 4

Max nTPM: 25.6
Min nTPM: 18.7
Sample A Female 25.6
Sample B Female 19.4
Sample C Male 18.7
Sample D Male 20.5
Ventral hippocampus
nTPM: 20.5
Samples: 4

Max nTPM: 29.3
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 19.9
Sample C Male 20.1
Sample D Male 29.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.1
Samples: 4

Max nTPM: 27.5
Min nTPM: 20.7
Sample A Male 23.2
Sample B Male 24.8
Sample C Female 20.7
Sample D Female 27.5
Hippocampal formation
nTPM: 15.9
Samples: 4

Max nTPM: 17.3
Min nTPM: 14.0
Sample A Male 16.1
Sample B Male 14.0
Sample C Female 16.1
Sample D Female 17.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
73994721 Antisense, RP_051214_03_F02, Mouse strain C57BL/6J (56 days, male) 2.0
69752047 Antisense, RP_050505_01_A04, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

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