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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.0 nTPM
HPA:70.0 nTPM
GTEx:44.5 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:13.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.4
2586 Male, age 75, left hemisphere 107.8
2828 Female, age 72, unknown 73.6
1827 Male, age 72, unknown 55.8
1833 Male, age 53, unknown 54.4
2666 Male, age 74, left hemisphere 51.2
1830 Male, age 51, unknown 48.5
2411 Female, age 72, unknown 45.2
1870 Female, age 42, unknown 42.8
2019 Male, age 18, unknown 42.8
2219 Male, age 76, both hemispheres 32.0
Dorsal raphe nucleus
nTPM: 56.3
2016 Female, age 72, unknown 65.4
2047 Male, age 72, unknown 63.3
1828 Male, age 53, unknown 62.9
2298 Female, age 72, unknown 47.9
2750 Male, age 76, both hemispheres 42.0
Inferior colliculus
nTPM: 70.0
1848 Female, age 42, unknown 91.1
2849 Male, age 72, unknown 79.5
1890 Male, age 53, unknown 59.6
2097 Female, age 72, unknown 49.6
Median raphe nucleus
nTPM: 46.9
2220 Male, age 76, midline 46.9
Pedunculopontine tegmental nucleus
nTPM: 45.8
2334 Male, age 80, both hemispheres 57.7
1921 Female, age 85, both hemispheres 47.8
2338 Male, age 61, both hemispheres 31.9
Periaquaductal grey, anterior
nTPM: 63.0
2502 Female, age 75, unknown 79.6
1947 Male, age 18, unknown 56.8
1795 Male, age 51, unknown 52.5
Periaquaductal grey, dorsal
nTPM: 63.9
1840 Male, age 53, unknown 72.6
2850 Male, age 76, both hemispheres 68.9
2464 Female, age 72, unknown 58.1
1831 Male, age 72, unknown 55.9
Periaquaductal grey, lateral
nTPM: 61.6
2140 Male, age 76, both hemispheres 74.2
2053 Male, age 18, unknown 64.8
2272 Male, age 74, both hemispheres 45.8
Pretectal area
nTPM: 55.6
2316 Male, age 76, right hemisphere 73.3
2407 Male, age 75, both hemispheres 66.0
1817 Female, age 42, unknown 61.8
2825 Male, age 18, unknown 59.7
1944 Female, age 72, unknown 55.1
1816 Male, age 51, unknown 54.9
2667 Female, age 75, unknown 53.7
2273 Male, age 74, both hemispheres 49.3
2007 Male, age 72, unknown 47.2
1815 Male, age 53, unknown 46.6
2224 Female, age 72, unknown 44.5
Red nucleus
nTPM: 58.9
1954 Female, age 42, unknown 68.6
2769 Male, age 72, unknown 67.7
2227 Male, age 72, unknown 64.7
2503 Female, age 72, unknown 63.8
2588 Male, age 74, left hemisphere 63.8
1821 Female, age 72, unknown 59.3
1865 Male, age 51, unknown 57.4
1904 Male, age 53, unknown 56.8
2823 Male, age 76, right hemisphere 52.0
2584 Male, age 75, left hemisphere 51.7
2725 Female, age 75, unknown 50.6
2785 Male, age 18, unknown 50.1
Substantia nigra
nTPM: 55.7
2699 Male, age 18, unknown 68.6
1916 Female, age 42, unknown 63.3
2583 Male, age 75, right hemisphere 61.9
2665 Male, age 74, both hemispheres 58.0
1889 Female, age 72, unknown 54.8
2590 Female, age 75, unknown 53.3
1851 Male, age 51, unknown 52.7
2409 Female, age 72, unknown 51.1
2241 Male, age 72, unknown 47.0
1941 Male, age 53, unknown 46.1
Superior colliculus
nTPM: 58.9
2664 Male, age 75, both hemispheres 89.1
1839 Male, age 51, unknown 70.1
1796 Male, age 53, unknown 63.6
2261 Male, age 18, unknown 61.6
2587 Male, age 74, left hemisphere 56.4
2668 Female, age 75, unknown 55.1
2087 Female, age 72, unknown 54.3
1895 Male, age 76, right hemisphere 51.5
1995 Male, age 72, unknown 49.0
1913 Female, age 42, unknown 38.5
Ventral tegmental area
nTPM: 50.2
1942 Male, age 51, unknown 55.3
2021 Male, age 53, unknown 55.0
1915 Female, age 42, unknown 51.3
2410 Female, age 72, unknown 48.6
2218 Male, age 76, both hemispheres 47.6
2223 Female, age 72, unknown 43.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.5
Samples: 139

Max nTPM: 155.2
Min nTPM: 5.5
Std nTPM: 30.4
Median nTPM: 35.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 155.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 142.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 141.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 139.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 137.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 120.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 119.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 112.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 107.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 107.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 103.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.3
FF:10158-103A5 76 years, female 47.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 19.4
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 18.1
Sample C Male 19.4
Sample D Male 16.5
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 16.1
Min nTPM: 11.3
Sample B Female 16.1
Sample C Male 12.0
Sample D Male 11.3
Substantia nigra
nTPM: 17.0
Samples: 4

Max nTPM: 27.1
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 27.1
Sample C Male 12.8
Sample D Male 16.0
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 52.0
Min nTPM: 15.1
Sample A Female 24.1
Sample B Female 52.0
Sample C Male 15.1
Sample D Male 16.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 14.1
Min nTPM: 13.2
Sample A Male 13.4
Sample B Male 13.2
Sample C Female 13.9
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
73994721 Antisense, RP_051214_03_F02, Mouse strain C57BL/6J (56 days, male) 0.4
69752047 Antisense, RP_050505_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.