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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:481.9 nTPM
HPA:481.9 nTPM
GTEx:476.8 nTPM
FANTOM5:818.0 Scaled Tags Per Million
Pig:580.3 nTPM
Mouse:939.8 nTPM
Allen mouse:19.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 481.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 379.5
2666 Male, age 74, left hemisphere 431.0
2411 Female, age 72, unknown 414.7
1870 Female, age 42, unknown 403.0
1827 Male, age 72, unknown 401.8
2019 Male, age 18, unknown 388.6
1833 Male, age 53, unknown 381.6
2828 Female, age 72, unknown 377.9
1830 Male, age 51, unknown 361.3
2219 Male, age 76, both hemispheres 335.8
2586 Male, age 75, left hemisphere 299.5
Dorsal raphe nucleus
nTPM: 392.9
2047 Male, age 72, unknown 434.3
2298 Female, age 72, unknown 432.6
2750 Male, age 76, both hemispheres 420.8
1828 Male, age 53, unknown 363.9
2016 Female, age 72, unknown 313.0
Inferior colliculus
nTPM: 354.9
2097 Female, age 72, unknown 386.2
1890 Male, age 53, unknown 347.5
1848 Female, age 42, unknown 343.8
2849 Male, age 72, unknown 342.0
Median raphe nucleus
nTPM: 481.9
2220 Male, age 76, midline 481.9
Pedunculopontine tegmental nucleus
nTPM: 363.2
2334 Male, age 80, both hemispheres 386.4
1921 Female, age 85, both hemispheres 367.8
2338 Male, age 61, both hemispheres 335.4
Periaquaductal grey, anterior
nTPM: 382.2
2502 Female, age 75, unknown 441.1
1795 Male, age 51, unknown 362.9
1947 Male, age 18, unknown 342.4
Periaquaductal grey, dorsal
nTPM: 332.6
2464 Female, age 72, unknown 343.4
2850 Male, age 76, both hemispheres 332.1
1831 Male, age 72, unknown 329.5
1840 Male, age 53, unknown 325.4
Periaquaductal grey, lateral
nTPM: 353.0
2272 Male, age 74, both hemispheres 385.7
2053 Male, age 18, unknown 357.6
2140 Male, age 76, both hemispheres 315.7
Pretectal area
nTPM: 398.7
1944 Female, age 72, unknown 485.6
1816 Male, age 51, unknown 457.2
2007 Male, age 72, unknown 431.4
1817 Female, age 42, unknown 431.2
1815 Male, age 53, unknown 431.1
2667 Female, age 75, unknown 394.8
2273 Male, age 74, both hemispheres 370.2
2407 Male, age 75, both hemispheres 366.9
2224 Female, age 72, unknown 362.6
2825 Male, age 18, unknown 337.3
2316 Male, age 76, right hemisphere 317.1
Red nucleus
nTPM: 382.1
2785 Male, age 18, unknown 422.1
1904 Male, age 53, unknown 410.7
2503 Female, age 72, unknown 405.2
1821 Female, age 72, unknown 399.0
2725 Female, age 75, unknown 395.2
1865 Male, age 51, unknown 383.4
2588 Male, age 74, left hemisphere 381.7
1954 Female, age 42, unknown 378.0
2584 Male, age 75, left hemisphere 361.0
2227 Male, age 72, unknown 358.2
2769 Male, age 72, unknown 356.7
2823 Male, age 76, right hemisphere 334.4
Substantia nigra
nTPM: 362.0
1889 Female, age 72, unknown 429.7
1916 Female, age 42, unknown 403.3
1851 Male, age 51, unknown 384.4
1941 Male, age 53, unknown 376.4
2699 Male, age 18, unknown 357.6
2583 Male, age 75, right hemisphere 347.9
2590 Female, age 75, unknown 341.9
2409 Female, age 72, unknown 339.9
2665 Male, age 74, both hemispheres 320.0
2241 Male, age 72, unknown 318.5
Superior colliculus
nTPM: 379.3
2261 Male, age 18, unknown 425.0
2587 Male, age 74, left hemisphere 424.5
2087 Female, age 72, unknown 413.6
1913 Female, age 42, unknown 403.7
1796 Male, age 53, unknown 399.7
1995 Male, age 72, unknown 392.3
1895 Male, age 76, right hemisphere 367.9
1839 Male, age 51, unknown 352.1
2668 Female, age 75, unknown 330.2
2664 Male, age 75, both hemispheres 283.8
Ventral tegmental area
nTPM: 371.4
2410 Female, age 72, unknown 404.2
2218 Male, age 76, both hemispheres 393.0
2223 Female, age 72, unknown 392.4
1915 Female, age 42, unknown 377.1
1942 Male, age 51, unknown 348.1
2021 Male, age 53, unknown 313.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 476.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 476.8
Samples: 139

Max nTPM: 1109.4
Min nTPM: 278.7
Std nTPM: 125.6
Median nTPM: 447.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1109.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 867.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 764.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 757.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 735.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 724.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 710.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 707.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 690.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 678.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 650.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 818.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 818.0
FF:10158-103A5 76 years, female 818.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 580.3
Pig sample Sample description nTPM
Midbrain
nTPM: 580.3
Samples: 4

Max nTPM: 944.8
Min nTPM: 345.2
Sample A Female 560.2
Sample B Female 345.2
Sample C Male 944.8
Sample D Male 471.1
Periaqueductal gray
nTPM: 302.5
Samples: 3

Max nTPM: 331.2
Min nTPM: 258.2
Sample B Female 318.1
Sample C Male 331.2
Sample D Male 258.2
Substantia nigra
nTPM: 440.3
Samples: 4

Max nTPM: 518.5
Min nTPM: 363.1
Sample A Female 518.5
Sample B Female 363.1
Sample C Male 460.1
Sample D Male 419.3
Superior colliculi
nTPM: 536.6
Samples: 4

Max nTPM: 639.3
Min nTPM: 461.9
Sample A Female 543.7
Sample B Female 501.3
Sample C Male 639.3
Sample D Male 461.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 939.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 939.9
Samples: 4

Max nTPM: 1000.5
Min nTPM: 874.3
Sample A Male 874.3
Sample B Male 930.5
Sample C Female 1000.5
Sample D Female 954.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.0
79591705 Antisense, RP_071218_02_B09, Mouse strain C57BL/6J (56 days, male) 30.6
106 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 26.2
107 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 21.6
70611467 Antisense, RP_050630_03_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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