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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:49.5 nTPM
FANTOM5:35.9 Scaled Tags Per Million
Pig:8.6 nTPM
Mouse:44.8 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043464
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.4
2481 Female, age 94, left hemisphere 37.2
2846 Female, age 79, unknown 35.0
2288 Male, age 75, left hemisphere 34.4
2289 Male, age 61, right hemisphere 32.8
2290 Female, age 72, unknown 32.8
1781 Male, age 74, unknown 31.9
1857 Female, age 85, left hemisphere 31.7
1854 Male, age 80, left hemisphere 31.1
Claustrum
nTPM: 32.2
1956 Male, age 74, unknown 33.9
2196 Female, age 79, unknown 33.8
2198 Male, age 80, both hemispheres 33.6
2292 Female, age 85, both hemispheres 33.1
2491 Male, age 75, both hemispheres 32.3
2284 Female, age 91, both hemispheres 31.5
2568 Male, age 61, both hemispheres 31.4
2645 Female, age 72, unknown 31.1
2392 Female, age 94, both hemispheres 28.8
Globus pallidus, externus
nTPM: 35.8
1996 Male, age 80, right hemisphere 39.0
2772 Female, age 79, unknown 37.3
2646 Male, age 61, right hemisphere 36.0
2395 Male, age 75, both hemispheres 35.5
2567 Female, age 72, unknown 31.2
Globus pallidus, internus
nTPM: 37.0
2287 Male, age 75, right hemisphere 42.4
2778 Female, age 91, both hemispheres 38.3
2483 Female, age 94, right hemisphere 37.3
1818 Male, age 74, unknown 36.6
2566 Female, age 72, unknown 35.5
2037 Male, age 80, right hemisphere 35.2
2111 Female, age 85, right hemisphere 33.4
Nucleus accumbens
nTPM: 32.8
2286 Male, age 75, left hemisphere 34.6
1856 Female, age 91, right hemisphere 34.5
2698 Female, age 72, unknown 34.5
1783 Male, age 74, unknown 33.7
2391 Female, age 94, left hemisphere 32.4
1806 Female, age 85, left hemisphere 32.3
2732 Male, age 80, right hemisphere 31.1
2824 Male, age 61, right hemisphere 29.4
Nucleus basalis of Meynert
nTPM: 33.2
2569 Male, age 61, both hemispheres 36.4
2484 Female, age 94, left hemisphere 33.7
2821 Male, age 75, both hemispheres 32.9
2393 Male, age 80, right hemisphere 29.9
Nucleus of the diagonal band
nTPM: 31.4
1812 Female, age 91, both hemispheres 32.6
2195 Female, age 85, both hemispheres 32.0
2775 Male, age 80, right hemisphere 31.7
1979 Male, age 74, unknown 31.1
2029 Male, age 61, right hemisphere 29.7
Olfactory tubercle
nTPM: 30.7
1846 Male, age 80, right hemisphere 32.1
1998 Female, age 91, both hemispheres 31.6
2487 Female, age 94, left hemisphere 30.5
2856 Male, age 75, right hemisphere 28.6
Putamen
nTPM: 31.9
2482 Female, age 94, left hemisphere 34.7
2489 Female, age 72, unknown 33.2
1838 Male, age 80, right hemisphere 32.1
2647 Male, age 75, left hemisphere 31.9
1937 Female, age 91, right hemisphere 31.8
2466 Female, age 79, unknown 31.6
1829 Male, age 74, unknown 28.3
Septal nuclei
nTPM: 31.9
1960 Male, age 74, unknown 34.5
2031 Female, age 72, unknown 33.6
2059 Female, age 85, both hemispheres 32.4
2394 Male, age 61, left hemisphere 31.0
2199 Male, age 80, right hemisphere 30.8
2629 Female, age 94, right hemisphere 30.7
2009 Female, age 91, both hemispheres 30.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.2
Samples: 246

Max nTPM: 86.0
Min nTPM: 21.2
Std nTPM: 10.4
Median nTPM: 42.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 86.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 78.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 77.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 76.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 75.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 71.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 70.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 68.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 68.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 67.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 46.8
Samples: 246

Max nTPM: 97.1
Min nTPM: 20.7
Std nTPM: 11.6
Median nTPM: 44.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 97.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 89.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 85.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 79.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 78.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 77.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 75.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 74.1
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 72.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 72.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 72.3
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Brain - Putamen (basal ganglia)
Average nTPM: 49.5
Samples: 205

Max nTPM: 92.2
Min nTPM: 22.5
Std nTPM: 9.9
Median nTPM: 48.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 92.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 80.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 74.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 73.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 72.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 71.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 71.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 69.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 69.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 69.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 68.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.9
FF:10164-103B2 76 years, female 35.9
Globus pallidus
Scaled Tags Per Million: 35.1
FF:10161-103A8 76 years, female 41.0
FF:10175-103C4 60 years, female 29.2
Nucleus accumbens
Scaled Tags Per Million: 23.6
FF:10037-101F1 23-56 years, mixed 23.6
Putamen
Scaled Tags Per Million: 29.9
FF:10176-103C5 60 years, female 29.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.6
Pig sample Sample description nTPM
Caudate
nTPM: 6.9
Samples: 4

Max nTPM: 7.3
Min nTPM: 6.5
Sample A Female 6.7
Sample B Female 7.3
Sample C Male 7.0
Sample D Male 6.5
Putamen
nTPM: 8.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 6.8
Sample A Female 10.5
Sample B Female 6.8
Sample C Male 8.6
Sample D Male 8.6
Septum
nTPM: 8.0
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.7
Sample A Female 7.8
Sample B Female 7.7
Sample C Male 8.6
Sample D Male 8.0
Ventral pallidum
nTPM: 8.4
Samples: 4

Max nTPM: 10.3
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 8.9
Sample C Male 10.3
Sample D Male 7.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 44.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.1
Samples: 4

Max nTPM: 55.7
Min nTPM: 33.1
Sample A Male 46.4
Sample B Male 55.7
Sample C Female 37.0
Sample D Female 33.1
Septum
nTPM: 44.8
Samples: 4

Max nTPM: 47.3
Min nTPM: 41.2
Sample A Male 47.3
Sample B Male 41.2
Sample C Female 45.8
Sample D Female 44.9
Ventral forebrain
nTPM: 42.6
Samples: 4

Max nTPM: 46.6
Min nTPM: 36.1
Sample A Male 44.8
Sample B Male 42.7
Sample C Female 46.6
Sample D Female 36.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69782324 Antisense, RP_050505_02_G04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69782324 Antisense, RP_050505_02_G04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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