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IGLON5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.1 nTPM
HPA:19.1 nTPM
GTEx:18.8 nTPM
FANTOM5:3.1 Scaled Tags Per Million
Pig:2.9 nTPM
Mouse:24.9 nTPM
Allen mouse:17.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.5
2219 Male, age 76, both hemispheres 20.6
1827 Male, age 72, unknown 17.0
2666 Male, age 74, left hemisphere 17.0
1833 Male, age 53, unknown 16.7
2411 Female, age 72, unknown 14.9
2828 Female, age 72, unknown 14.1
1830 Male, age 51, unknown 14.0
2019 Male, age 18, unknown 13.8
1870 Female, age 42, unknown 13.6
2586 Male, age 75, left hemisphere 13.1
Dorsal raphe nucleus
nTPM: 15.8
1828 Male, age 53, unknown 23.1
2047 Male, age 72, unknown 17.7
2750 Male, age 76, both hemispheres 13.7
2298 Female, age 72, unknown 13.5
2016 Female, age 72, unknown 11.1
Inferior colliculus
nTPM: 16.0
2849 Male, age 72, unknown 22.4
1848 Female, age 42, unknown 19.6
2097 Female, age 72, unknown 11.1
1890 Male, age 53, unknown 10.7
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Pedunculopontine tegmental nucleus
nTPM: 19.1
2334 Male, age 80, both hemispheres 20.5
1921 Female, age 85, both hemispheres 20.0
2338 Male, age 61, both hemispheres 16.7
Periaquaductal grey, anterior
nTPM: 18.4
2502 Female, age 75, unknown 23.3
1947 Male, age 18, unknown 16.9
1795 Male, age 51, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 14.4
1840 Male, age 53, unknown 16.8
2464 Female, age 72, unknown 16.1
2850 Male, age 76, both hemispheres 14.5
1831 Male, age 72, unknown 10.3
Periaquaductal grey, lateral
nTPM: 11.2
2140 Male, age 76, both hemispheres 15.4
2053 Male, age 18, unknown 10.9
2272 Male, age 74, both hemispheres 7.4
Pretectal area
nTPM: 15.9
1816 Male, age 51, unknown 22.8
2667 Female, age 75, unknown 20.4
1944 Female, age 72, unknown 19.9
2007 Male, age 72, unknown 19.3
1817 Female, age 42, unknown 18.4
2407 Male, age 75, both hemispheres 14.3
2825 Male, age 18, unknown 13.6
1815 Male, age 53, unknown 13.2
2316 Male, age 76, right hemisphere 13.0
2224 Female, age 72, unknown 12.1
2273 Male, age 74, both hemispheres 8.3
Red nucleus
nTPM: 9.3
2785 Male, age 18, unknown 13.6
2584 Male, age 75, left hemisphere 12.0
2227 Male, age 72, unknown 11.6
2769 Male, age 72, unknown 11.3
2823 Male, age 76, right hemisphere 9.9
1821 Female, age 72, unknown 9.4
2588 Male, age 74, left hemisphere 9.2
1954 Female, age 42, unknown 8.6
2503 Female, age 72, unknown 8.0
1865 Male, age 51, unknown 6.4
2725 Female, age 75, unknown 6.0
1904 Male, age 53, unknown 5.8
Substantia nigra
nTPM: 13.5
1941 Male, age 53, unknown 22.8
2665 Male, age 74, both hemispheres 19.9
1889 Female, age 72, unknown 19.0
1916 Female, age 42, unknown 16.9
1851 Male, age 51, unknown 11.0
2699 Male, age 18, unknown 10.5
2409 Female, age 72, unknown 10.3
2241 Male, age 72, unknown 10.0
2590 Female, age 75, unknown 8.1
2583 Male, age 75, right hemisphere 6.2
Superior colliculus
nTPM: 15.0
2664 Male, age 75, both hemispheres 20.5
1839 Male, age 51, unknown 19.4
1895 Male, age 76, right hemisphere 18.7
2087 Female, age 72, unknown 18.4
2668 Female, age 75, unknown 18.0
2261 Male, age 18, unknown 15.5
1796 Male, age 53, unknown 13.4
2587 Male, age 74, left hemisphere 13.0
1913 Female, age 42, unknown 7.5
1995 Male, age 72, unknown 6.1
Ventral tegmental area
nTPM: 11.3
2218 Male, age 76, both hemispheres 14.3
2410 Female, age 72, unknown 13.1
1915 Female, age 42, unknown 13.0
1942 Male, age 51, unknown 11.2
2223 Female, age 72, unknown 8.6
2021 Male, age 53, unknown 7.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.8
Samples: 139

Max nTPM: 125.9
Min nTPM: 1.5
Std nTPM: 16.4
Median nTPM: 15.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 125.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 78.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 75.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 57.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 41.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 39.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 38.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 37.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 36.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.1
FF:10158-103A5 76 years, female 3.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.9
Pig sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.9
Min nTPM: 1.7
Sample A Female 3.9
Sample B Female 1.7
Sample C Male 3.1
Sample D Male 3.0
Periaqueductal gray
nTPM: 2.4
Samples: 3

Max nTPM: 2.7
Min nTPM: 2.2
Sample B Female 2.7
Sample C Male 2.3
Sample D Male 2.2
Substantia nigra
nTPM: 2.2
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.4
Sample A Female 2.8
Sample B Female 1.4
Sample C Male 2.4
Sample D Male 2.0
Superior colliculi
nTPM: 2.7
Samples: 4

Max nTPM: 4.1
Min nTPM: 1.1
Sample A Female 2.4
Sample B Female 1.1
Sample C Male 3.1
Sample D Male 4.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.9
Samples: 4

Max nTPM: 25.4
Min nTPM: 24.5
Sample A Male 25.4
Sample B Male 24.9
Sample C Female 24.5
Sample D Female 24.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.8
71380538 Antisense, RP_050419_02_E05, Mouse strain C57BL/6J (56 days, male) 17.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.