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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:44.1 nTPM
HPA:44.1 nTPM
GTEx:52.5 nTPM
FANTOM5:63.2 Scaled Tags Per Million
Pig:56.5 nTPM
Mouse:79.7 nTPM
Allen mouse:10.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA007484
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.7
2288 Male, age 75, left hemisphere 47.0
1857 Female, age 85, left hemisphere 44.1
2481 Female, age 94, left hemisphere 43.9
2846 Female, age 79, unknown 43.3
1854 Male, age 80, left hemisphere 43.1
1781 Male, age 74, unknown 41.6
2290 Female, age 72, unknown 41.1
2289 Male, age 61, right hemisphere 37.8
Claustrum
nTPM: 41.2
2198 Male, age 80, both hemispheres 43.4
1956 Male, age 74, unknown 42.8
2196 Female, age 79, unknown 42.4
2392 Female, age 94, both hemispheres 42.4
2491 Male, age 75, both hemispheres 41.1
2568 Male, age 61, both hemispheres 40.8
2292 Female, age 85, both hemispheres 40.7
2284 Female, age 91, both hemispheres 39.1
2645 Female, age 72, unknown 37.6
Globus pallidus, externus
nTPM: 42.5
2395 Male, age 75, both hemispheres 46.8
2772 Female, age 79, unknown 46.8
1996 Male, age 80, right hemisphere 46.6
2646 Male, age 61, right hemisphere 37.6
2567 Female, age 72, unknown 34.6
Globus pallidus, internus
nTPM: 44.1
2287 Male, age 75, right hemisphere 49.5
2778 Female, age 91, both hemispheres 47.9
2483 Female, age 94, right hemisphere 44.5
2037 Male, age 80, right hemisphere 44.0
1818 Male, age 74, unknown 43.7
2111 Female, age 85, right hemisphere 41.3
2566 Female, age 72, unknown 37.6
Nucleus accumbens
nTPM: 43.3
2286 Male, age 75, left hemisphere 47.4
1856 Female, age 91, right hemisphere 44.6
2698 Female, age 72, unknown 43.8
2391 Female, age 94, left hemisphere 43.4
1806 Female, age 85, left hemisphere 43.0
1783 Male, age 74, unknown 42.1
2824 Male, age 61, right hemisphere 42.0
2732 Male, age 80, right hemisphere 39.7
Nucleus basalis of Meynert
nTPM: 40.9
2821 Male, age 75, both hemispheres 43.9
2393 Male, age 80, right hemisphere 41.9
2484 Female, age 94, left hemisphere 40.2
2569 Male, age 61, both hemispheres 37.8
Nucleus of the diagonal band
nTPM: 43.8
1812 Female, age 91, both hemispheres 46.3
2775 Male, age 80, right hemisphere 45.0
2195 Female, age 85, both hemispheres 43.4
2029 Male, age 61, right hemisphere 42.8
1979 Male, age 74, unknown 41.4
Olfactory tubercle
nTPM: 42.6
1846 Male, age 80, right hemisphere 45.9
1998 Female, age 91, both hemispheres 43.8
2487 Female, age 94, left hemisphere 41.3
2856 Male, age 75, right hemisphere 39.6
Putamen
nTPM: 41.1
2482 Female, age 94, left hemisphere 45.4
1937 Female, age 91, right hemisphere 43.3
2466 Female, age 79, unknown 43.2
1838 Male, age 80, right hemisphere 43.0
1829 Male, age 74, unknown 39.7
2647 Male, age 75, left hemisphere 37.1
2489 Female, age 72, unknown 36.1
Septal nuclei
nTPM: 43.0
2031 Female, age 72, unknown 48.3
1960 Male, age 74, unknown 45.1
2009 Female, age 91, both hemispheres 44.2
2629 Female, age 94, right hemisphere 43.4
2059 Female, age 85, both hemispheres 40.7
2199 Male, age 80, right hemisphere 39.8
2394 Male, age 61, left hemisphere 39.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.3
Samples: 246

Max nTPM: 78.7
Min nTPM: 35.9
Std nTPM: 7.1
Median nTPM: 50.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 78.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 77.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 74.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 74.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 72.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 69.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 69.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 65.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 64.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.4
Samples: 246

Max nTPM: 127.6
Min nTPM: 28.6
Std nTPM: 9.2
Median nTPM: 51.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 127.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 78.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 77.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 76.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 73.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 71.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 68.9
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 68.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 68.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 68.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 68.3
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Brain - Putamen (basal ganglia)
Average nTPM: 52.5
Samples: 205

Max nTPM: 92.3
Min nTPM: 38.5
Std nTPM: 7.8
Median nTPM: 51.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 92.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 79.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 77.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 70.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 68.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 67.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 67.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 66.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 66.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 66.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 65.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.4
FF:10164-103B2 76 years, female 59.4
Globus pallidus
Scaled Tags Per Million: 52.4
FF:10161-103A8 76 years, female 59.9
FF:10175-103C4 60 years, female 44.9
Nucleus accumbens
Scaled Tags Per Million: 60.7
FF:10037-101F1 23-56 years, mixed 60.7
Putamen
Scaled Tags Per Million: 63.2
FF:10176-103C5 60 years, female 63.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 56.5
Pig sample Sample description nTPM
Caudate
nTPM: 50.2
Samples: 4

Max nTPM: 56.8
Min nTPM: 42.9
Sample A Female 51.1
Sample B Female 49.9
Sample C Male 56.8
Sample D Male 42.9
Putamen
nTPM: 55.3
Samples: 4

Max nTPM: 64.8
Min nTPM: 41.9
Sample A Female 64.0
Sample B Female 41.9
Sample C Male 64.8
Sample D Male 50.3
Septum
nTPM: 56.5
Samples: 4

Max nTPM: 62.7
Min nTPM: 50.3
Sample A Female 62.7
Sample B Female 50.3
Sample C Male 57.1
Sample D Male 56.0
Ventral pallidum
nTPM: 51.0
Samples: 4

Max nTPM: 56.1
Min nTPM: 47.5
Sample A Female 47.5
Sample B Female 56.1
Sample C Male 53.0
Sample D Male 47.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 79.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 76.2
Samples: 4

Max nTPM: 80.1
Min nTPM: 72.8
Sample A Male 80.1
Sample B Male 72.8
Sample C Female 74.9
Sample D Female 76.8
Septum
nTPM: 79.7
Samples: 4

Max nTPM: 83.2
Min nTPM: 77.7
Sample A Male 77.7
Sample B Male 79.1
Sample C Female 83.2
Sample D Female 78.7
Ventral forebrain
nTPM: 78.5
Samples: 4

Max nTPM: 81.5
Min nTPM: 76.5
Sample A Male 76.5
Sample B Male 76.5
Sample C Female 81.5
Sample D Female 79.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.2
67815541 Antisense, RP_040920_01_G11, Mouse strain C57BL/6J (56 days, male) 10.2
Pallidum
Expression energy: 7.6
67815541 Antisense, RP_040920_01_G11, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.