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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.9 nTPM
HPA:44.9 nTPM
GTEx:55.7 nTPM
FANTOM5:78.2 Scaled Tags Per Million
Pig:67.6 nTPM
Mouse:89.7 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.4
2411 Female, age 72, unknown 45.9
1870 Female, age 42, unknown 44.7
1827 Male, age 72, unknown 43.8
1833 Male, age 53, unknown 43.0
2019 Male, age 18, unknown 41.8
2828 Female, age 72, unknown 41.1
1830 Male, age 51, unknown 40.3
2219 Male, age 76, both hemispheres 39.8
2666 Male, age 74, left hemisphere 38.7
2586 Male, age 75, left hemisphere 34.7
Dorsal raphe nucleus
nTPM: 44.6
2298 Female, age 72, unknown 48.5
2047 Male, age 72, unknown 45.1
2750 Male, age 76, both hemispheres 45.1
1828 Male, age 53, unknown 42.7
2016 Female, age 72, unknown 41.7
Inferior colliculus
nTPM: 40.3
2097 Female, age 72, unknown 41.8
1848 Female, age 42, unknown 41.1
1890 Male, age 53, unknown 39.6
2849 Male, age 72, unknown 38.9
Median raphe nucleus
nTPM: 44.9
2220 Male, age 76, midline 44.9
Pedunculopontine tegmental nucleus
nTPM: 44.4
2334 Male, age 80, both hemispheres 45.2
1921 Female, age 85, both hemispheres 44.8
2338 Male, age 61, both hemispheres 43.4
Periaquaductal grey, anterior
nTPM: 42.5
1947 Male, age 18, unknown 44.8
1795 Male, age 51, unknown 41.4
2502 Female, age 75, unknown 41.2
Periaquaductal grey, dorsal
nTPM: 41.2
2850 Male, age 76, both hemispheres 43.8
2464 Female, age 72, unknown 40.9
1840 Male, age 53, unknown 40.6
1831 Male, age 72, unknown 39.6
Periaquaductal grey, lateral
nTPM: 42.2
2272 Male, age 74, both hemispheres 44.0
2140 Male, age 76, both hemispheres 41.4
2053 Male, age 18, unknown 41.2
Pretectal area
nTPM: 42.7
2224 Female, age 72, unknown 44.7
2273 Male, age 74, both hemispheres 43.9
2667 Female, age 75, unknown 43.9
1815 Male, age 53, unknown 43.5
1816 Male, age 51, unknown 43.4
1817 Female, age 42, unknown 43.3
2007 Male, age 72, unknown 42.6
1944 Female, age 72, unknown 42.5
2825 Male, age 18, unknown 41.6
2316 Male, age 76, right hemisphere 41.3
2407 Male, age 75, both hemispheres 39.4
Red nucleus
nTPM: 41.8
1821 Female, age 72, unknown 46.8
2725 Female, age 75, unknown 44.1
2823 Male, age 76, right hemisphere 43.2
1904 Male, age 53, unknown 43.0
1865 Male, age 51, unknown 42.8
1954 Female, age 42, unknown 42.7
2503 Female, age 72, unknown 42.6
2769 Male, age 72, unknown 40.5
2785 Male, age 18, unknown 40.5
2227 Male, age 72, unknown 40.1
2588 Male, age 74, left hemisphere 38.7
2584 Male, age 75, left hemisphere 36.7
Substantia nigra
nTPM: 44.0
2241 Male, age 72, unknown 48.1
1851 Male, age 51, unknown 46.8
1916 Female, age 42, unknown 46.8
2409 Female, age 72, unknown 45.5
2699 Male, age 18, unknown 44.2
1889 Female, age 72, unknown 43.7
1941 Male, age 53, unknown 43.3
2590 Female, age 75, unknown 41.6
2665 Male, age 74, both hemispheres 41.6
2583 Male, age 75, right hemisphere 38.2
Superior colliculus
nTPM: 41.2
2587 Male, age 74, left hemisphere 44.4
1895 Male, age 76, right hemisphere 43.3
1913 Female, age 42, unknown 42.5
1796 Male, age 53, unknown 42.1
2261 Male, age 18, unknown 41.2
2668 Female, age 75, unknown 40.9
1995 Male, age 72, unknown 40.6
2087 Female, age 72, unknown 40.6
1839 Male, age 51, unknown 40.3
2664 Male, age 75, both hemispheres 36.5
Ventral tegmental area
nTPM: 43.8
2410 Female, age 72, unknown 45.7
1915 Female, age 42, unknown 45.5
2218 Male, age 76, both hemispheres 45.0
2223 Female, age 72, unknown 42.6
2021 Male, age 53, unknown 42.2
1942 Male, age 51, unknown 42.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.7
Samples: 139

Max nTPM: 86.4
Min nTPM: 34.1
Std nTPM: 9.0
Median nTPM: 54.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 86.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 82.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 77.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 74.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 73.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 71.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 69.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 69.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.2
FF:10158-103A5 76 years, female 78.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.6
Pig sample Sample description nTPM
Midbrain
nTPM: 67.6
Samples: 4

Max nTPM: 95.7
Min nTPM: 53.3
Sample A Female 95.7
Sample B Female 63.0
Sample C Male 58.4
Sample D Male 53.3
Periaqueductal gray
nTPM: 57.9
Samples: 3

Max nTPM: 62.8
Min nTPM: 53.3
Sample B Female 57.6
Sample C Male 62.8
Sample D Male 53.3
Substantia nigra
nTPM: 67.0
Samples: 4

Max nTPM: 88.3
Min nTPM: 56.3
Sample A Female 88.3
Sample B Female 57.0
Sample C Male 66.5
Sample D Male 56.3
Superior colliculi
nTPM: 66.3
Samples: 4

Max nTPM: 80.4
Min nTPM: 59.5
Sample A Female 80.4
Sample B Female 59.5
Sample C Male 63.0
Sample D Male 62.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.8
Samples: 4

Max nTPM: 90.6
Min nTPM: 87.8
Sample A Male 90.3
Sample B Male 87.8
Sample C Female 90.3
Sample D Female 90.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
67815541 Antisense, RP_040920_01_G11, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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