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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:58.0 nTPM
HPA:58.0 nTPM
GTEx:48.1 nTPM
FANTOM5:56.7 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA064152
Glial cells Medium
Neuronal cells High


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.9
2481 Female, age 94, left hemisphere 62.7
2288 Male, age 75, left hemisphere 57.8
2290 Female, age 72, unknown 56.9
2846 Female, age 79, unknown 56.5
1854 Male, age 80, left hemisphere 56.4
1857 Female, age 85, left hemisphere 55.4
1781 Male, age 74, unknown 55.0
2289 Male, age 61, right hemisphere 54.7
Claustrum
nTPM: 53.5
2292 Female, age 85, both hemispheres 55.0
2392 Female, age 94, both hemispheres 54.9
2196 Female, age 79, unknown 54.6
1956 Male, age 74, unknown 53.8
2284 Female, age 91, both hemispheres 53.2
2645 Female, age 72, unknown 53.1
2198 Male, age 80, both hemispheres 52.8
2491 Male, age 75, both hemispheres 52.5
2568 Male, age 61, both hemispheres 51.4
Globus pallidus, externus
nTPM: 56.4
2772 Female, age 79, unknown 58.9
2395 Male, age 75, both hemispheres 58.6
1996 Male, age 80, right hemisphere 57.2
2567 Female, age 72, unknown 54.7
2646 Male, age 61, right hemisphere 52.8
Globus pallidus, internus
nTPM: 58.0
1818 Male, age 74, unknown 60.0
2287 Male, age 75, right hemisphere 59.6
2037 Male, age 80, right hemisphere 58.9
2778 Female, age 91, both hemispheres 58.6
2111 Female, age 85, right hemisphere 56.7
2483 Female, age 94, right hemisphere 56.1
2566 Female, age 72, unknown 55.9
Nucleus accumbens
nTPM: 56.7
2391 Female, age 94, left hemisphere 61.6
2286 Male, age 75, left hemisphere 57.8
1806 Female, age 85, left hemisphere 57.0
2732 Male, age 80, right hemisphere 56.2
2824 Male, age 61, right hemisphere 55.7
1856 Female, age 91, right hemisphere 55.1
1783 Male, age 74, unknown 54.9
2698 Female, age 72, unknown 54.9
Nucleus basalis of Meynert
nTPM: 54.3
2393 Male, age 80, right hemisphere 56.3
2484 Female, age 94, left hemisphere 55.6
2821 Male, age 75, both hemispheres 53.9
2569 Male, age 61, both hemispheres 51.4
Nucleus of the diagonal band
nTPM: 54.5
1979 Male, age 74, unknown 54.9
1812 Female, age 91, both hemispheres 54.8
2195 Female, age 85, both hemispheres 54.7
2029 Male, age 61, right hemisphere 53.9
2775 Male, age 80, right hemisphere 53.9
Olfactory tubercle
nTPM: 53.9
1846 Male, age 80, right hemisphere 55.8
2856 Male, age 75, right hemisphere 54.4
2487 Female, age 94, left hemisphere 52.9
1998 Female, age 91, both hemispheres 52.7
Putamen
nTPM: 55.8
2482 Female, age 94, left hemisphere 59.2
1838 Male, age 80, right hemisphere 58.5
2466 Female, age 79, unknown 56.3
1937 Female, age 91, right hemisphere 56.1
1829 Male, age 74, unknown 55.5
2489 Female, age 72, unknown 54.4
2647 Male, age 75, left hemisphere 50.8
Septal nuclei
nTPM: 54.1
2394 Male, age 61, left hemisphere 56.1
2199 Male, age 80, right hemisphere 54.6
2629 Female, age 94, right hemisphere 54.6
2009 Female, age 91, both hemispheres 54.1
2059 Female, age 85, both hemispheres 53.6
2031 Female, age 72, unknown 53.1
1960 Male, age 74, unknown 52.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.8
Samples: 246

Max nTPM: 98.2
Min nTPM: 14.9
Std nTPM: 12.2
Median nTPM: 43.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 98.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 88.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 86.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 84.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 81.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 81.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 75.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 74.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 71.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 70.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 67.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.3
Samples: 246

Max nTPM: 132.9
Min nTPM: 17.1
Std nTPM: 14.3
Median nTPM: 38.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 132.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 131.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 95.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 82.7
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 81.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 74.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 72.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 72.3
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 69.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 68.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 67.5
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Brain - Putamen (basal ganglia)
Average nTPM: 48.1
Samples: 205

Max nTPM: 105.0
Min nTPM: 25.1
Std nTPM: 12.3
Median nTPM: 46.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 105.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 94.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 86.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 83.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 78.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 77.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 77.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 75.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 73.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 71.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 70.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.7
FF:10164-103B2 76 years, female 45.7
Globus pallidus
Scaled Tags Per Million: 56.7
FF:10175-103C4 60 years, female 69.4
FF:10161-103A8 76 years, female 44.0
Nucleus accumbens
Scaled Tags Per Million: 19.7
FF:10037-101F1 23-56 years, mixed 19.7
Putamen
Scaled Tags Per Million: 45.1
FF:10176-103C5 60 years, female 45.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.