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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.0 nTPM
HPA:58.0 nTPM
GTEx:51.5 nTPM
FANTOM5:53.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.1
1833 Male, age 53, unknown 57.7
1870 Female, age 42, unknown 57.1
1830 Male, age 51, unknown 56.6
2411 Female, age 72, unknown 55.8
2019 Male, age 18, unknown 55.6
2219 Male, age 76, both hemispheres 54.9
1827 Male, age 72, unknown 54.8
2828 Female, age 72, unknown 54.5
2666 Male, age 74, left hemisphere 52.9
2586 Male, age 75, left hemisphere 51.0
Dorsal raphe nucleus
nTPM: 57.1
2750 Male, age 76, both hemispheres 59.0
2298 Female, age 72, unknown 57.9
1828 Male, age 53, unknown 57.6
2016 Female, age 72, unknown 55.5
2047 Male, age 72, unknown 55.5
Inferior colliculus
nTPM: 55.4
1890 Male, age 53, unknown 56.3
2097 Female, age 72, unknown 55.5
2849 Male, age 72, unknown 55.0
1848 Female, age 42, unknown 54.9
Median raphe nucleus
nTPM: 56.4
2220 Male, age 76, midline 56.4
Pedunculopontine tegmental nucleus
nTPM: 58.0
2338 Male, age 61, both hemispheres 60.4
2334 Male, age 80, both hemispheres 57.9
1921 Female, age 85, both hemispheres 55.6
Periaquaductal grey, anterior
nTPM: 55.5
1947 Male, age 18, unknown 56.6
2502 Female, age 75, unknown 56.3
1795 Male, age 51, unknown 53.6
Periaquaductal grey, dorsal
nTPM: 55.9
2850 Male, age 76, both hemispheres 57.1
2464 Female, age 72, unknown 56.5
1831 Male, age 72, unknown 55.8
1840 Male, age 53, unknown 54.2
Periaquaductal grey, lateral
nTPM: 56.7
2272 Male, age 74, both hemispheres 59.1
2140 Male, age 76, both hemispheres 55.8
2053 Male, age 18, unknown 55.0
Pretectal area
nTPM: 55.9
2316 Male, age 76, right hemisphere 59.3
2273 Male, age 74, both hemispheres 58.3
2224 Female, age 72, unknown 56.6
1815 Male, age 53, unknown 56.1
1944 Female, age 72, unknown 55.8
2667 Female, age 75, unknown 55.6
1817 Female, age 42, unknown 55.3
2825 Male, age 18, unknown 54.6
1816 Male, age 51, unknown 54.4
2007 Male, age 72, unknown 54.2
2407 Male, age 75, both hemispheres 54.2
Red nucleus
nTPM: 56.7
1821 Female, age 72, unknown 59.9
2823 Male, age 76, right hemisphere 59.1
1954 Female, age 42, unknown 58.2
2725 Female, age 75, unknown 57.5
1904 Male, age 53, unknown 57.2
2769 Male, age 72, unknown 56.7
2785 Male, age 18, unknown 56.6
2227 Male, age 72, unknown 56.5
1865 Male, age 51, unknown 56.2
2503 Female, age 72, unknown 55.9
2588 Male, age 74, left hemisphere 53.2
2584 Male, age 75, left hemisphere 52.7
Substantia nigra
nTPM: 55.7
2241 Male, age 72, unknown 58.1
1851 Male, age 51, unknown 56.9
1889 Female, age 72, unknown 56.7
2699 Male, age 18, unknown 56.6
1916 Female, age 42, unknown 56.4
1941 Male, age 53, unknown 55.1
2590 Female, age 75, unknown 55.0
2665 Male, age 74, both hemispheres 54.6
2409 Female, age 72, unknown 54.5
2583 Male, age 75, right hemisphere 53.0
Superior colliculus
nTPM: 55.5
1895 Male, age 76, right hemisphere 57.9
1913 Female, age 42, unknown 57.6
1995 Male, age 72, unknown 56.8
1839 Male, age 51, unknown 56.6
2587 Male, age 74, left hemisphere 55.6
2261 Male, age 18, unknown 55.4
2668 Female, age 75, unknown 54.5
2087 Female, age 72, unknown 54.3
1796 Male, age 53, unknown 54.1
2664 Male, age 75, both hemispheres 52.5
Ventral tegmental area
nTPM: 55.8
2223 Female, age 72, unknown 57.0
2218 Male, age 76, both hemispheres 56.6
1915 Female, age 42, unknown 55.9
1942 Male, age 51, unknown 55.4
2410 Female, age 72, unknown 55.3
2021 Male, age 53, unknown 54.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.5
Samples: 139

Max nTPM: 88.8
Min nTPM: 23.5
Std nTPM: 13.1
Median nTPM: 50.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 88.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 83.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 81.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 79.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 79.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 78.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 76.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 74.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 73.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.9
FF:10158-103A5 76 years, female 53.9

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