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SPAG16
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.6 nTPM
HPA:39.6 nTPM
GTEx:57.5 nTPM
FANTOM5:49.4 Scaled Tags Per Million
Pig:32.4 nTPM
Mouse:0.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.9
2586 Male, age 75, left hemisphere 37.4
1870 Female, age 42, unknown 37.1
2019 Male, age 18, unknown 36.2
1833 Male, age 53, unknown 35.3
2666 Male, age 74, left hemisphere 35.0
2411 Female, age 72, unknown 34.8
1830 Male, age 51, unknown 34.2
2828 Female, age 72, unknown 34.0
1827 Male, age 72, unknown 33.4
2219 Male, age 76, both hemispheres 31.8
Dorsal raphe nucleus
nTPM: 37.3
2016 Female, age 72, unknown 42.5
2298 Female, age 72, unknown 40.7
1828 Male, age 53, unknown 37.4
2047 Male, age 72, unknown 33.1
2750 Male, age 76, both hemispheres 32.8
Inferior colliculus
nTPM: 35.0
2097 Female, age 72, unknown 36.6
1890 Male, age 53, unknown 36.3
1848 Female, age 42, unknown 33.8
2849 Male, age 72, unknown 33.2
Median raphe nucleus
nTPM: 33.6
2220 Male, age 76, midline 33.6
Pedunculopontine tegmental nucleus
nTPM: 31.8
2334 Male, age 80, both hemispheres 32.6
1921 Female, age 85, both hemispheres 32.2
2338 Male, age 61, both hemispheres 30.5
Periaquaductal grey, anterior
nTPM: 35.3
1795 Male, age 51, unknown 35.8
2502 Female, age 75, unknown 35.6
1947 Male, age 18, unknown 34.5
Periaquaductal grey, dorsal
nTPM: 39.6
2850 Male, age 76, both hemispheres 47.1
1840 Male, age 53, unknown 39.7
1831 Male, age 72, unknown 36.4
2464 Female, age 72, unknown 35.2
Periaquaductal grey, lateral
nTPM: 37.5
2140 Male, age 76, both hemispheres 38.8
2272 Male, age 74, both hemispheres 38.0
2053 Male, age 18, unknown 35.8
Pretectal area
nTPM: 35.0
2273 Male, age 74, both hemispheres 40.5
2224 Female, age 72, unknown 36.0
1815 Male, age 53, unknown 35.9
2007 Male, age 72, unknown 35.8
1817 Female, age 42, unknown 35.6
1816 Male, age 51, unknown 35.3
2667 Female, age 75, unknown 34.0
2825 Male, age 18, unknown 34.0
1944 Female, age 72, unknown 33.6
2407 Male, age 75, both hemispheres 32.6
2316 Male, age 76, right hemisphere 31.3
Red nucleus
nTPM: 36.6
2503 Female, age 72, unknown 39.9
2588 Male, age 74, left hemisphere 38.6
1904 Male, age 53, unknown 38.0
2725 Female, age 75, unknown 37.5
1865 Male, age 51, unknown 37.0
2769 Male, age 72, unknown 36.6
1821 Female, age 72, unknown 36.5
2785 Male, age 18, unknown 36.3
2227 Male, age 72, unknown 36.2
1954 Female, age 42, unknown 35.7
2823 Male, age 76, right hemisphere 33.7
2584 Male, age 75, left hemisphere 33.4
Substantia nigra
nTPM: 38.0
2241 Male, age 72, unknown 43.8
2699 Male, age 18, unknown 42.7
2409 Female, age 72, unknown 40.7
1851 Male, age 51, unknown 39.4
1916 Female, age 42, unknown 38.4
2665 Male, age 74, both hemispheres 36.4
1889 Female, age 72, unknown 36.3
2590 Female, age 75, unknown 34.6
2583 Male, age 75, right hemisphere 34.4
1941 Male, age 53, unknown 33.3
Superior colliculus
nTPM: 35.5
1995 Male, age 72, unknown 40.1
2668 Female, age 75, unknown 38.2
1913 Female, age 42, unknown 37.1
2587 Male, age 74, left hemisphere 35.9
2664 Male, age 75, both hemispheres 34.9
1796 Male, age 53, unknown 33.9
2087 Female, age 72, unknown 33.8
1895 Male, age 76, right hemisphere 33.6
2261 Male, age 18, unknown 33.6
1839 Male, age 51, unknown 33.4
Ventral tegmental area
nTPM: 34.9
1915 Female, age 42, unknown 36.3
2021 Male, age 53, unknown 35.6
2223 Female, age 72, unknown 35.6
1942 Male, age 51, unknown 34.8
2218 Male, age 76, both hemispheres 33.5
2410 Female, age 72, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.5
Samples: 139

Max nTPM: 133.4
Min nTPM: 17.1
Std nTPM: 21.7
Median nTPM: 53.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 133.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 112.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 107.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 104.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 99.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 97.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 96.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 94.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 93.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 93.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.4
FF:10158-103A5 76 years, female 49.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.4
Pig sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 19.5
Min nTPM: 11.1
Sample A Female 13.1
Sample B Female 19.5
Sample C Male 13.0
Sample D Male 11.1
Periaqueductal gray
nTPM: 32.4
Samples: 3

Max nTPM: 35.9
Min nTPM: 29.2
Sample B Female 29.2
Sample C Male 32.1
Sample D Male 35.9
Substantia nigra
nTPM: 14.5
Samples: 4

Max nTPM: 16.5
Min nTPM: 13.3
Sample A Female 13.3
Sample B Female 14.8
Sample C Male 16.5
Sample D Male 13.4
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 7.9
Sample C Male 13.4
Sample D Male 13.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.8
Sample A Male 1.0
Sample B Male 0.9
Sample C Female 0.8
Sample D Female 1.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75080199 Antisense, RP_060412_06_H02, Mouse strain C57BL/6J (56 days, male) 0.3
71891856 Antisense, RP_051005_04_F12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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